4X9X

Biochemical Roles for Conserved Residues in the Bacterial Fatty Acid Binding Protein Family


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 ?
  • R-Value Free: 0.144 
  • R-Value Work: 0.118 
  • R-Value Observed: 0.119 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history


Literature

Biochemical Roles for Conserved Residues in the Bacterial Fatty Acid-binding Protein Family.

Broussard, T.C.Miller, D.J.Jackson, P.Nourse, A.White, S.W.Rock, C.O.

(2016) J Biol Chem 291: 6292-6303

  • DOI: https://doi.org/10.1074/jbc.M115.706820
  • Primary Citation of Related Structures:  
    4X9X

  • PubMed Abstract: 

    Fatty acid kinase (Fak) is a ubiquitous Gram-positive bacterial enzyme consisting of an ATP-binding protein (FakA) that phosphorylates the fatty acid bound to FakB. In Staphylococcus aureus, Fak is a global regulator of virulence factor transcription and is essential for the activation of exogenous fatty acids for incorporation into phospholipids. The 1.2-? x-ray structure of S. aureus FakB2, activity assays, solution studies, site-directed mutagenesis, and in vivo complementation were used to define the functions of the five conserved residues that define the FakB protein family (Pfam02645). The fatty acid tail is buried within the protein, and the exposed carboxyl group is bound by a Ser-93-fatty acid carboxyl-Thr-61-His-266 hydrogen bond network. The guanidinium of the invariant Arg-170 is positioned to potentially interact with a bound acylphosphate. The reduced thermal denaturation temperatures of the T61A, S93A, and H266A FakB2 mutants illustrate the importance of the hydrogen bond network in protein stability. The FakB2 T61A, S93A, and H266A mutants are 1000-fold less active in the Fak assay, and the R170A mutant is completely inactive. All FakB2 mutants form FakA(FakB2)2 complexes except FakB2(R202A), which is deficient in FakA binding. Allelic replacement shows that strains expressing FakB2 mutants are defective in fatty acid incorporation into phospholipids and virulence gene transcription. These conserved residues are likely to perform the same critical functions in all bacterial fatty acid-binding proteins.


  • Organizational Affiliation

    From the Departments of Infectious Diseases and.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DegV domain-containing protein MW1315299Staphylococcus aureus subsp. aureus MW2Mutation(s): 0 
Gene Names: MW1315
UniProt
Find proteins for Q8NWR0 (Staphylococcus aureus (strain MW2))
Explore Q8NWR0 
Go to UniProtKB:  Q8NWR0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NWR0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 ?
  • R-Value Free: 0.144 
  • R-Value Work: 0.118 
  • R-Value Observed: 0.119 
  • Space Group: C 1 2 1
Unit Cell:
Length ( ? )Angle ( ? )
a = 167.343¦Á = 90
b = 41.872¦Â = 94.49
c = 38.573¦Ă = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM034496
Cancer Center Support GrantUnited StatesCA21765
American Lebanese Syrian Associated CharitiesUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2016-01-27
    Type: Initial release
  • Version 1.1: 2016-02-03
    Changes: Database references
  • Version 1.2: 2016-03-30
    Changes: Database references
  • Version 1.3: 2017-09-20
    Changes: Author supporting evidence, Database references, Derived calculations
  • Version 1.4: 2019-12-25
    Changes: Author supporting evidence
  • Version 1.5: 2024-02-28
    Changes: Data collection, Database references
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