Download MendeleyOxidoreductase B from Phytophthora sojae
Banerjee, S., Turella, S., Morth, J.P., Abou Hachem, M.To be published.
8S71 | pdb_00008s71
Oxidoreductase B from Phytophthora sojae
- PDB DOI: https://doi.org/10.2210/pdb8S71/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Phytophthora sojae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-02-28 Released: 2025-03-12
- Funding Organization(s): Novo Nordisk Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 ?
- R-Value Free: 0.232 (Depositor), 0.233 (DCC)
- R-Value Work: 0.168 (Depositor), 0.177 (DCC)
Starting Model: in silico
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mucin-like protein | 185 | Phytophthora sojae | Mutation(s): 0 Gene Names: PHYSODRAFT_485524 |  | |
UniProt | |||||
Find proteins for G4YSM7 (Phytophthora sojae (strain P6497)) Explore G4YSM7 Go to UniProtKB: G4YSM7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G4YSM7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CU (Subject of Investigation/LOI) Query on CU | C [auth A], D [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 ?
- R-Value Free: 0.232 (Depositor), 0.233 (DCC)
- R-Value Work: 0.168 (Depositor), 0.177 (DCC)
Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 40.067 | ¦Á = 90 |
| b = 106.897 | ¦Â = 114.099 |
| c = 44.815 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| xia2 | data reduction |
| TRUNCATE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-12 Deposition Author(s): Banerjee, S., Turella, S., Morth, J.P., Abou Hachem, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Novo Nordisk Foundation | Denmark | NNF20OC0064747 |
Revision History (Full details and data files)
- Version 1.0: 2025-03-12
Type: Initial release
