Download Mendeleycis-CaaD E114Q mutant with covalent intermediates of the hydration and decarboxylation of acetylenecarboxylic acid
Silva, K., Geiger, J.H., Draths, K.To be published.
9O2P | pdb_00009o2p
cis-CaaD E114Q mutant with covalent intermediates of the hydration and decarboxylation of acetylenecarboxylic acid
- PDB DOI: https://doi.org/10.2210/pdb9O2P/pdb
- Entry: 9O2P supersedes: 9NG3
- Classification: HYDROLASE
- Organism(s): coryneform bacterium
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2025-04-04 Released: 2025-04-16
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 ?
- R-Value Free: 0.236 (Depositor), 0.236 (DCC)
- R-Value Work: 0.173 (Depositor), 0.173 (DCC)
- R-Value Observed: 0.178 (Depositor)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cis-3-chloroacrylic acid dehalogenase | 164 | coryneform bacterium | Mutation(s): 1 Gene Names: cis-caaD |  | |
UniProt | |||||
Find proteins for Q6VPE5 (coryneform bacterium) Explore Q6VPE5 Go to UniProtKB: Q6VPE5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6VPE5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cis-3-chloroacrylic acid dehalogenase | 164 | coryneform bacterium | Mutation(s): 1 Gene Names: cis-caaD |  | |
UniProt | |||||
Find proteins for Q6VPE5 (coryneform bacterium) Explore Q6VPE5 Go to UniProtKB: Q6VPE5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6VPE5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | F [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| 3OH (Subject of Investigation/LOI) Query on 3OH | E [auth B] | 3-HYDROXY-PROPANOIC ACID C3 H6 O3 ALRHLSYJTWAHJZ-UHFFFAOYSA-N |  | ||
| AKR (Subject of Investigation/LOI) Query on AKR | D [auth A] | ACRYLIC ACID C3 H4 O2 NIXOWILDQLNWCW-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| N80 Query on N80 | C | L-PEPTIDE LINKING | C7 H11 N O2 |  | PRO |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 ?
- R-Value Free: 0.236 (Depositor), 0.236 (DCC)
- R-Value Work: 0.173 (Depositor), 0.173 (DCC)
- R-Value Observed: 0.178 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 60.608 | ¦Á = 90 |
| b = 101.228 | ¦Â = 90 |
| c = 148.09 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-04-16 Deposition Author(s): Silva, K., Geiger, J.H., Draths, K.
- This entry supersedes: 9NG3
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-04-16
Type: Initial release
