3N2W

Crystal structure of the N-terminal beta-aminopeptidase BapA from Sphingosinicella xenopeptidilytica

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3n2wb_	Alpha and beta proteins (a+b)	DmpA/ArgJ-like	DmpA/ArgJ-like	automated matches	automated matches	(Sphingosinicella xenopeptidilytica ) [TaxId: 364098 ],	SCOPe (2.08)
D	d3n2wd_	Alpha and beta proteins (a+b)	DmpA/ArgJ-like	DmpA/ArgJ-like	automated matches	automated matches	(Sphingosinicella xenopeptidilytica ) [TaxId: 364098 ],	SCOPe (2.08)
A	d3n2wa_	Alpha and beta proteins (a+b)	DmpA/ArgJ-like	DmpA/ArgJ-like	automated matches	automated matches	(Sphingosinicella xenopeptidilytica ) [TaxId: 364098 ],	SCOPe (2.08)
C	d3n2wc_	Alpha and beta proteins (a+b)	DmpA/ArgJ-like	DmpA/ArgJ-like	automated matches	automated matches	(Sphingosinicella xenopeptidilytica ) [TaxId: 364098 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Peptidase_S58	e3n2wB1	A: a+b two layers	X: MocoBD/DmpA-related (From Homology)	H: MocoBD/DmpA-related	T: DmpA/ArgJ	F: Peptidase_S58	ECOD (1.6)
D	Peptidase_S58	e3n2wD1	A: a+b two layers	X: MocoBD/DmpA-related (From Homology)	H: MocoBD/DmpA-related	T: DmpA/ArgJ	F: Peptidase_S58	ECOD (1.6)
A	Peptidase_S58	e3n2wA1	A: a+b two layers	X: MocoBD/DmpA-related (From Homology)	H: MocoBD/DmpA-related	T: DmpA/ArgJ	F: Peptidase_S58	ECOD (1.6)
C	Peptidase_S58	e3n2wC1	A: a+b two layers	X: MocoBD/DmpA-related (From Homology)	H: MocoBD/DmpA-related	T: DmpA/ArgJ	F: Peptidase_S58	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.60.70.12	Alpha Beta	4-Layer Sandwich	L-amino peptidase D-ALA esterase/amidase	L-amino peptidase D-ALA esterase/amidase	CATH (4.3.0)
D	3.60.70.12	Alpha Beta	4-Layer Sandwich	L-amino peptidase D-ALA esterase/amidase	L-amino peptidase D-ALA esterase/amidase	CATH (4.3.0)
A	3.60.70.12	Alpha Beta	4-Layer Sandwich	L-amino peptidase D-ALA esterase/amidase	L-amino peptidase D-ALA esterase/amidase	CATH (4.3.0)
C	3.60.70.12	Alpha Beta	4-Layer Sandwich	L-amino peptidase D-ALA esterase/amidase	L-amino peptidase D-ALA esterase/amidase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03576	Peptidase family S58 (Peptidase_S58)	Peptidase family S58	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Beta-peptidyl aminopeptidase	peptidase activity catalytic activity, acting on a protein aminopeptidase activity hydrolase activity exopeptidase activity catalytic activity identical protein binding protein binding binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR005321	Peptidase S58, DmpA	Family
A, B, C, D	IPR016117	ArgJ-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.