2VB1
HEWL at 0.65 angstrom resolution
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.7 | SITTING DROP METHOD. PROTEIN SOLUTION: 35 MG/ML HEWL, 0.02 M NA ACETATE BUFFER PH 4.7 WELL SOLUTION: 1 M NANO3, 0.1 M NA ACETATE BUFFER PH 4.7, 20 % ETHYLENE GLYCOL PROTEIN AND WELL SOLUTIONS MIXED 1:1 IN A DROP AND SEEDED |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.69 | 26.9 |
Crystal Data
Unit Cell | |
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Length ( ? ) | Angle ( ? ) |
a = 27.07 | ¦Á = 87.98 |
b = 31.25 | ¦Â = 108 |
c = 33.76 | ¦Ã = 112.11 |
Symmetry | |
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Space Group | P 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC CCD | MIRRORS | 2006-07-05 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | APS BEAMLINE 19-ID | APS | 19-ID |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 0.65 | 30 | 97.6 | 0.04 | 36.2 | 7.1 | 187165 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 0.65 | 0.67 | 67.3 | 0.18 | 4.2 | 2.7 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | OTHER | FREE R-VALUE | NONE | 0.65 | 30 | 187165 | 9365 | 97.5 | 0.0839 | 0.0848 | 0.0952 | RANDOM |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
Coordinate Error | ||
---|---|---|
Structure Solution Method | Refinement High Resolution | Refinement Low Resolution |
65 | 976.69 | 1172.99 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
s_non_zero_chiral_vol | 0.141 |
s_zero_chiral_vol | 0.12 |
s_anti_bump_dis_restr | 0.098 |
s_approx_iso_adps | 0.085 |
s_angle_d | 0.06 |
s_similar_adp_cmpnt | 0.041 |
s_similar_dist | 0.04 |
s_from_restr_planes | 0.0355 |
s_bond_d | 0.024 |
s_rigid_bond_adp_cmpnt | 0.006 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 1001 |
Nucleic Acid Atoms | |
Solvent Atoms | 170 |
Heterogen Atoms | 52 |
Software
Software | |
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Software Name | Purpose |
SHELXL-97 | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
ACORN | phasing |