4UZ1
STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | 4.6 | 1.5 M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 4.6 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.9 | 34 |
Crystal Data
Unit Cell | |
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Length ( ? ) | Angle ( ? ) |
a = 59.969 | ¦Á = 90 |
b = 69.843 | ¦Â = 90 |
c = 77.535 | ¦Ã = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | PIXEL | DECTRIS PIXEL | 2012-12-07 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | DIAMOND BEAMLINE I03 | Diamond | I03 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.4 | 77 | 98 | 0.05 | 14.1 | 3.5 | 63440 | -3 | 12.6 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | OTHER | THROUGHOUT | NONE | 1.4 | 51.89 | 62077 | 995 | 97.39 | 0.14447 | 0.14387 | 0.18045 | RANDOM | 18.766 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
0.66 | -0.29 | -0.38 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_sphericity_free | 32.875 |
r_dihedral_angle_2_deg | 31.848 |
r_dihedral_angle_4_deg | 16.339 |
r_sphericity_bonded | 12.948 |
r_dihedral_angle_3_deg | 12.14 |
r_dihedral_angle_1_deg | 6.277 |
r_scbond_it | 4.622 |
r_rigid_bond_restr | 3.229 |
r_mcangle_it | 2.845 |
r_mcbond_it | 2.56 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 2867 |
Nucleic Acid Atoms | |
Solvent Atoms | 286 |
Heterogen Atoms | 34 |
Software
Software | |
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Software Name | Purpose |
REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |