Room-temperature structure of lysozyme by serial femtosecond crystallography (BITS)
Serial Crystallography (SX)
Starting Model(s)
Initial Refinement Model(s) |
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Type | Source | Accession Code | Details |
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experimental model | PDB | 7WKR | |
Crystallization
Crystalization Experiments |
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ID | Method | pH | Temperature | Details |
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1 | SMALL TUBES | | 298.5 | Na-acetate, NaCl, PEG 8000 |
Crystal Properties |
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Matthews coefficient | Solvent content |
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2.12 | 41.99 |
Crystal Data
Unit Cell |
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Length ( ? ) | Angle ( ? ) |
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a = 79.48 | ¦Á = 90 |
b = 79.48 | ¦Â = 90 |
c = 38.48 | ¦Ã = 90 |
Symmetry |
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Space Group | P 43 21 2 |
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Diffraction
Diffraction Experiment |
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
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1 | 1 | x-ray | 298.15 | CCD | RAYONIX MX225-HS | | 2021-12-23 | M | SINGLE WAVELENGTH |
Radiation Source |
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
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1 | FREE ELECTRON LASER | PAL-XFEL BEAMLINE NCI | 1.30 | PAL-XFEL | NCI |
Serial Crystallography
Sample delivery method |
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Diffraction ID | Description | Sample Delivery Method |
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1 | | injection |
Data Collection
Overall |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | CC (Half) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
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1 | 2.1 | 80 | 100 | 0.9866 | 7.38 | 590.7 | | 7605 | | | |
Highest Resolution Shell |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | CC (Half) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
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1 | 2.1 | 2.17 | | | 0.4766 | | | |
Refinement
Statistics |
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | Mean Isotropic B |
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X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 7WKR | 2.1 | 39.74 | 1.35 | 7605 | 720 | 99.96 | 0.2228 | 0.22 | 0.22 | 0.2489 | 0.24 | 43.7231 |
Temperature Factor Modeling |
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
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| | | | | |
Non-Hydrogen Atoms Used in Refinement |
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Non-Hydrogen Atoms | Number |
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Protein Atoms | 1001 |
Nucleic Acid Atoms | |
Solvent Atoms | 30 |
Heterogen Atoms | |
Software
Software |
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Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
CrystFEL | data reduction |
CrystFEL | data scaling |
PHENIX | phasing |