PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2DGK designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2DGK_PLP_A_1500 | 77% | 41% | 0.132 | 0.973 | 1.07 | 1.23 | 1 | 3 | 1 | 0 | 100% | 0.9375 |
2DGK_PLP_B_1501 | 76% | 44% | 0.123 | 0.961 | 0.89 | 1.25 | 1 | 3 | 1 | 0 | 100% | 0.9375 |
2DGK_PLP_C_1502 | 75% | 43% | 0.132 | 0.967 | 0.97 | 1.25 | 1 | 4 | 1 | 0 | 100% | 0.9375 |
2DGK_PLP_D_1503 | 75% | 42% | 0.143 | 0.976 | 1 | 1.23 | 1 | 3 | 1 | 0 | 100% | 0.9375 |
2DGK_PLP_E_1504 | 70% | 41% | 0.142 | 0.959 | 1.07 | 1.23 | 1 | 4 | 1 | 0 | 100% | 0.9375 |
2DGK_PLP_F_1505 | 65% | 39% | 0.147 | 0.949 | 1.21 | 1.19 | 2 | 3 | 1 | 0 | 100% | 0.9375 |
1XEY_PLP_A_500 | 98% | 20% | 0.062 | 0.988 | 1.71 | 1.7 | 3 | 5 | 2 | 0 | 100% | 0.9375 |
1PMM_PLP_B_500 | 93% | 41% | 0.077 | 0.971 | 0.77 | 1.49 | - | 6 | 1 | 0 | 100% | 0.9375 |
2DGL_PLP_B_500 | 76% | 39% | 0.145 | 0.983 | 1.02 | 1.34 | - | 5 | 0 | 0 | 100% | 0.9375 |
2DGM_PLP_E_502 | 75% | 38% | 0.125 | 0.957 | 0.93 | 1.48 | - | 6 | 1 | 0 | 100% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |