Ligand validation:2VMT

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 2VMT designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2VMT_PLP_A_501	86%	49%	0.085	0.963	0.99	0.99	2	2	2	0	94%	0.9375
2VIA_PLP_A_1406	94%	44%	0.065	0.975	1.1	1.06	2	2	1	0	94%	0.9375
2VMW_PLP_A_501	92%	50%	0.071	0.971	1	0.93	2	2	1	0	94%	0.9375
1KKJ_PLP_A_501	91%	5%	0.088	0.974	1.65	3.49	4	10	0	0	100%	0.9375
1KKP_PLP_A_501	90%	11%	0.081	0.976	1.69	2.5	4	8	1	0	94%	0.9375
1KL1_PLP_A_501	87%	9%	0.091	0.975	1.74	2.67	5	7	1	0	94%	0.9375
9J0V_PLP_A_301	100%	36%	0.037	0.987	0.82	1.68	-	5	0	0	100%	0.9375
2BIE_PLP_B_1361	100%	28%	0.039	0.989	1.48	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	38%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	21%	0.045	0.993	1.96	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	15%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.