Ligand validation:2Y4K

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2Y4K designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2Y4K_GDP_B_401	80%	47%	0.107	0.956	0.96	1.08	1	4	0	0	100%	0.5
2Y4K_GDP_A_401	61%	44%	0.128	0.915	1.01	1.14	1	4	2	0	100%	1
2Y4L_GDP_A_401	86%	31%	0.109	0.977	1.21	1.53	2	7	0	0	100%	1
2BO7_GDP_B_1383	76%	37%	0.136	0.973	1.04	1.41	1	5	4	0	100%	1
1RRG_GDP_A_183	100%	17%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
2CXX_GDP_B_2401	100%	29%	0.031	0.989	1.26	1.57	1	3	0	0	100%	1
4LUC_GDP_A_204	100%	40%	0.036	0.992	1.22	1.11	2	2	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
4PZZ_GDP_A_201	100%	54%	0.035	0.989	0.92	0.86	1	1	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.