Ligand validation:5GMF

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5GMF designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5GMF_NAG_A_907	77%	26%	0.114	0.952	1.17	1.79	1	5	1	100%	0.9333
5GMF_NAG_B_906	73%	23%	0.132	0.958	1.12	2.05	1	8	0	100%	0.9333
5GMF_NAG_A_902	71%	21%	0.147	0.97	0.94	2.34	1	4	0	100%	0.9333
5GMF_NAG_C_906	71%	43%	0.138	0.958	0.57	1.6	-	1	0	100%	0.9333
5GMF_NAG_C_903	69%	29%	0.146	0.961	0.69	2.12	-	6	0	100%	0.9333
5GMF_NAG_D_904	68%	32%	0.142	0.955	0.81	1.88	-	5	0	100%	0.9333
5GMF_NAG_D_907	67%	48%	0.14	0.949	0.64	1.35	-	3	0	100%	0.9333
5GMF_NAG_A_908	66%	44%	0.151	0.956	0.43	1.71	-	4	0	100%	0.9333
5GMF_NAG_B_903	65%	17%	0.15	0.951	0.84	2.74	-	8	0	100%	0.9333
5GMF_NAG_B_909	64%	45%	0.144	0.944	0.4	1.7	-	2	0	100%	0.9333
5GMF_NAG_C_907	63%	54%	0.144	0.939	0.61	1.16	-	1	0	100%	0.9333
5GMF_NAG_D_909	59%	46%	0.172	0.954	0.49	1.58	-	2	0	100%	0.9333
5GMF_NAG_C_909	57%	37%	0.153	0.93	0.64	1.8	-	6	0	100%	0.9333
5GMF_NAG_C_908	55%	23%	0.167	0.937	1.12	2.04	1	5	0	100%	0.9333
5GMF_NAG_D_908	53%	26%	0.151	0.913	1.08	1.91	1	6	0	100%	0.9333
5GMF_NAG_D_910	47%	38%	0.182	0.922	0.78	1.64	-	4	0	100%	0.9333
5GMF_NAG_B_910	47%	60%	0.172	0.91	0.46	1.04	-	1	0	100%	0.9333
5GMF_NAG_C_910	26%	15%	0.228	0.87	0.91	2.81	1	5	0	100%	0.9333
6IF5_NAG_A_1004	86%	28%	0.085	0.953	0.87	1.99	1	6	0	100%	0.9333
5ZSN_NAG_A_1006	84%	48%	0.091	0.952	0.58	1.39	-	3	0	100%	0.9333
5ZSL_NAG_A_901	83%	53%	0.106	0.966	0.48	1.32	-	1	1	100%	0.9333
5GMH_NAG_A_905	82%	31%	0.101	0.957	1.02	1.7	1	4	0	100%	0.9333
8TTY_NAG_A_905	80%	81%	0.087	0.936	0.27	0.55	-	-	0	100%	0.9333
3H0C_NAG_A_794	100%	56%	0.021	0.995	0.61	1.08	-	1	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	100%	0.9333
3GXM_NAG_A_498	100%	45%	0.026	0.992	0.75	1.34	-	2	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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5GMF

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5GMF designated by the RCSB