Download MendeleyStructure of Beta-Glucosidase at Atomic Resolution from Thermus Thermophilus Hb8
Lokanath, N.K., Shiromizu, I., Miyano, M., Yokoyama, S., Kuramitsu, S., Kunishima, N.To be published.
1UG6
Structure of beta-glucosidase at atomic resolution from thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb1UG6/pdb
- Entry: 1UG6 supersedes: 1UAH
- Classification: HYDROLASE
- Organism(s): Thermus thermophilus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2003-06-12 Released: 2003-06-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.99 ?
- R-Value Free: 0.130
- R-Value Work: 0.121
- R-Value Observed: 0.122
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| beta-glycosidase | 431 | Thermus thermophilus | Mutation(s): 0 EC: 3.2.1.21 |  | |
UniProt | |||||
Find proteins for Q8GEB3 (Thermus thermophilus) Explore Q8GEB3 Go to UniProtKB: Q8GEB3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8GEB3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.99 ?
- R-Value Free: 0.130
- R-Value Work: 0.121
- R-Value Observed: 0.122
- Space Group: C 2 2 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 109.092 | ¦Á = 90 |
| b = 116.463 | ¦Â = 90 |
| c = 87.362 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2003-06-24 Deposition Author(s): Lokanath, N.K., Shiromizu, I., Miyano, M., Yokoyama, S., Kuramitsu, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
- This entry supersedes: 1UAH
Revision History (Full details and data files)
- Version 1.0: 2003-06-24
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
