Download MendeleyDehydration-induced structural phase transition in crystals of D-xylose isomerase from streptomyces rubiginosus
Gramiccia, F., Besnard, C., Schiltz, M.To be published.
3GNX
Structure of dehydrated D-xylose isomerase from streptomyces rubiginosus
- PDB DOI: https://doi.org/10.2210/pdb3GNX/pdb
- Classification: ISOMERASE
- Organism(s): Streptomyces rubiginosus
- Mutation(s): No
- Deposited: 2009-03-18 Released: 2010-03-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.206
- R-Value Work: 0.160
- R-Value Observed: 0.163
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Xylose isomerase | A, B [auth E] | 387 | Streptomyces rubiginosus | Mutation(s): 0 EC: 5.3.1.5 |  |
UniProt | |||||
Find proteins for P24300 (Streptomyces rubiginosus) Explore P24300 Go to UniProtKB: P24300 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24300 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| XYL Query on XYL | C [auth A], F [auth E] | Xylitol C5 H12 O5 HEBKCHPVOIAQTA-SCDXWVJYSA-N |  | ||
| MN Query on MN | D [auth A], E [auth A], G [auth E], H [auth E] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.206
- R-Value Work: 0.160
- R-Value Observed: 0.163
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 98.853 | ¦Á = 90 |
| b = 87.65 | ¦Â = 90 |
| c = 94.531 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| STOE | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2010-03-23 Deposition Author(s): Gramiccia, F., Schiltz, M.
Revision History (Full details and data files)
- Version 1.0: 2010-03-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Derived calculations, Structure summary - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary
