Download MendeleyGolgi Mannosidase II in complex with swainsonine at 1.3 Angstrom.
Kuntz, D.A., Rose, D.R.To be published.
3BLB
Crystal structure of Golgi Mannosidase II in complex with swainsonine at 1.3 Angstrom resolution
- PDB DOI: https://doi.org/10.2210/pdb3BLB/pdb
- Classification: HYDROLASE
- Organism(s): Drosophila melanogaster
- Expression System: Drosophila melanogaster
- Mutation(s): No
- Deposited: 2007-12-10 Released: 2008-01-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 ?
- R-Value Free: 0.185
- R-Value Work: 0.166
- R-Value Observed: 0.168
Starting Model: experimental
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This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha-mannosidase 2 | 1,045 | Drosophila melanogaster | Mutation(s): 0 Gene Names: alpha-Man-II, GmII, CG18802 EC: 3.2.1.114 |  | |
UniProt | |||||
Find proteins for Q24451 (Drosophila melanogaster) Explore Q24451 Go to UniProtKB: Q24451 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q24451 | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | Go to GlyGen: Q24451-1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| SWA Query on SWA | D [auth A] | 1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2A,8B-TRIOL C8 H15 N O3 FXUAIOOAOAVCGD-WCTZXXKLSA-N |  | ||
| MRD Query on MRD | E [auth A] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | ||
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 ?
- R-Value Free: 0.185
- R-Value Work: 0.166
- R-Value Observed: 0.168
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 68.767 | ¦Á = 90 |
| b = 109.662 | ¦Â = 90 |
| c = 138.9 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2008-01-08 Deposition Author(s): Kuntz, D.A., Rose, D.R.
Revision History (Full details and data files)
- Version 1.0: 2008-01-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description, Structure summary - Version 1.4: 2024-10-16
Changes: Structure summary
