Download MendeleyThe role of distal histidine in carbonmonoxide DHP structure
Zhao, J., Franzen, S.To be published.
4GZG
Crystal structures of DHPA-CO complex
- PDB DOI: https://doi.org/10.2210/pdb4GZG/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Amphitrite ornata
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2012-09-06 Released: 2013-09-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 ?
- R-Value Free: 0.209
- R-Value Work: 0.177
- R-Value Observed: 0.179
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dehaloperoxidase A | 137 | Amphitrite ornata | Mutation(s): 0 Gene Names: DHPA |  | |
UniProt | |||||
Find proteins for Q9NAV8 (Amphitrite ornata) Explore Q9NAV8 Go to UniProtKB: Q9NAV8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9NAV8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A], E [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| SO4 Query on SO4 | F [auth B], G [auth B], H [auth B], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CMO Query on CMO | D [auth A], J [auth B] | CARBON MONOXIDE C O UGFAIRIUMAVXCW-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 ?
- R-Value Free: 0.209
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 57.725 | ¦Á = 90 |
| b = 67.27 | ¦Â = 90 |
| c = 69.055 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASES | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2013-09-11 Deposition Author(s): Zhao, J., Franzen, S.
Revision History (Full details and data files)
- Version 1.0: 2013-09-11
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
