Download MendeleyCrystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017
Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Jedrzejczak, R., Joachimiak, A., Anderson, W.F.To be published.
4ICH | pdb_00004ich
Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017
- PDB DOI: https://doi.org/10.2210/pdb4ICH/pdb
- Classification: Transcription Regulator
- Organism(s): Saccharomonospora viridis DSM 43017
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-12-10 Released: 2013-01-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 ?
- R-Value Free: 0.247 (Depositor), 0.252 (DCC)
- R-Value Work: 0.199 (Depositor), 0.205 (DCC)
- R-Value Observed: 0.201 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator | 311 | Saccharomonospora viridis DSM 43017 | Mutation(s): 0 Gene Names: Svir_16270 |  | |
UniProt | |||||
Find proteins for C7MT25 (Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / CCUG 5913 / NBRC 12207 / NCIMB 9602 / P101)) Explore C7MT25 Go to UniProtKB: C7MT25 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C7MT25 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| B3P Query on B3P | D [auth A], H [auth B] | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C11 H26 N2 O6 HHKZCCWKTZRCCL-UHFFFAOYSA-N |  | ||
| BR Query on BR | E [auth A] | BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M |  | ||
| BME Query on BME | C [auth A], G [auth B] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | F [auth A], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 ?
- R-Value Free: 0.247 (Depositor), 0.252 (DCC)
- R-Value Work: 0.199 (Depositor), 0.205 (DCC)
- R-Value Observed: 0.201 (Depositor)
Diffraction Data: https://doi.org/10.18430/M34ICH
Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 42.845 | ¦Á = 90 |
| b = 76.929 | ¦Â = 90 |
| c = 109.258 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2013-01-02 Deposition Author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Jedrzejczak, R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-01-02
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2025-03-26
Changes: Data collection, Database references, Derived calculations, Structure summary
