Download MendeleyCrystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with lipoyl-AMP
Hughes, S.J., Antoshchenko, T., Song, J.H., Park, H.W.To be published.
5ICL
Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with lipoyl-AMP
- PDB DOI: https://doi.org/10.2210/pdb5ICL/pdb
- Classification: LIGASE,TRANSFERASE
- Organism(s): Enterococcus faecalis V583
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-02-23 Released: 2017-03-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.235
- R-Value Work: 0.198
- R-Value Observed: 0.199
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lipoate--protein ligase | 352 | Enterococcus faecalis V583 | Mutation(s): 0 Gene Names: lplA-2, EF_2741 EC: 2.7.7.63 (PDB Primary Data), 6.3.1.20 (UniProt) |  | |
UniProt | |||||
Find proteins for Q830N7 (Enterococcus faecalis (strain ATCC 700802 / V583)) Explore Q830N7 Go to UniProtKB: Q830N7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q830N7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LAQ Query on LAQ | C [auth A], D [auth B] | 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE C18 H26 N5 O8 P S2 QWEGOCJRZOKSOE-ADUAKINBSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.235
- R-Value Work: 0.198
- R-Value Observed: 0.199
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 50.942 | ¦Á = 90 |
| b = 69.35 | ¦Â = 92.15 |
| c = 97.685 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| MOLREP | phasing |
| DENZO | data reduction |
Entry History
Deposition Data
- Released Date: 2017-03-15 Deposition Author(s): Hughes, S.J., Antoshchenko, T., Song, J.H., Park, H.W.
Revision History (Full details and data files)
- Version 1.0: 2017-03-15
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Refinement description
