Download MendeleyCrystal structure of spermidine/spermine N-acetyltransferase SpeG from Yersinia pestis
Filippova, E.V., Wawrzak, Z., Kiryukhina, O., Shatsman, S., Anderson, W.F.To be published.
5WIF
Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Yersinia pestis
- PDB DOI: https://doi.org/10.2210/pdb5WIF/pdb
- Classification: TRANSFERASE
- Organism(s): Yersinia pestis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-07-19 Released: 2017-08-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.242
- R-Value Work: 0.188
- R-Value Observed: 0.191
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spermidine N1-acetyltransferase | 184 | Yersinia pestis | Mutation(s): 0 Gene Names: speG, y1405, YP_2698 EC: 2.3.1.57 |  | |
UniProt | |||||
Find proteins for A0A5P8YIA2 (Yersinia pestis) Explore A0A5P8YIA2 Go to UniProtKB: A0A5P8YIA2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A5P8YIA2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG5 Query on PG5 | D [auth B] | 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE C8 H18 O4 YFNKIDBQEZZDLK-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | E [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| BO3 Query on BO3 | G [auth C] | BORIC ACID B H3 O3 KGBXLFKZBHKPEV-UHFFFAOYSA-N |  | ||
| K Query on K | F [auth C] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.242
- R-Value Work: 0.188
- R-Value Observed: 0.191
- Space Group: I 2 2 2
- Diffraction Data: https://doi.org/10.18430/m35wif
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 102.596 | ¦Á = 90 |
| b = 120.114 | ¦Â = 90 |
| c = 122.752 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-08-02 Deposition Author(s): Filippova, E.V., Wawrzak, Z., Kiryukhina, O., Shatsman, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2017-08-02
Type: Initial release - Version 1.1: 2017-11-22
Changes: Refinement description - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
