Download MendeleyA ROS-Sensing Transcription Factor Promotes RpoS Accumulation to Resist Oxidative Stress
Yuan, X.L., Wang, W.W.To be published.
9L6B
A ROS-Sensing Transcription Factor Promotes RpoS Accumulation to Resist Oxidative Stress
- PDB DOI: https://doi.org/10.2210/pdb9L6B/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-12-24 Released: 2025-01-29
- Funding Organization(s): Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 ?
- R-Value Free: 0.271
- R-Value Work: 0.229
- R-Value Observed: 0.231
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UPF0225 protein YchJ -A | 60 | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Mutation(s): 0 Gene Names: ychJ, STM14_2121 |  | |
UniProt | |||||
Find proteins for A0A0F6B249 (Salmonella typhimurium (strain 14028s / SGSC 2262)) Explore A0A0F6B249 Go to UniProtKB: A0A0F6B249 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0F6B249 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UPF0225 protein YchJ -B | 60 | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Mutation(s): 0 Gene Names: ychJ, STM14_2121 |  | |
UniProt | |||||
Find proteins for A0A0F6B249 (Salmonella typhimurium (strain 14028s / SGSC 2262)) Explore A0A0F6B249 Go to UniProtKB: A0A0F6B249 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0F6B249 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UPF0225 protein YchJ -C | 32 | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Mutation(s): 0 Gene Names: ychJ, STM14_2121 |  | |
UniProt | |||||
Find proteins for A0A0F6B249 (Salmonella typhimurium (strain 14028s / SGSC 2262)) Explore A0A0F6B249 Go to UniProtKB: A0A0F6B249 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0F6B249 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 ?
- R-Value Free: 0.271
- R-Value Work: 0.229
- R-Value Observed: 0.231
- Space Group: P 43 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 58.937 | ¦Á = 90 |
| b = 58.937 | ¦Â = 90 |
| c = 124.367 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-01-29 Deposition Author(s): Yuan, X.L., Wang, W.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-01-29
Type: Initial release
