Download MendeleyStructure of the scaffolding protein and portal within the bacteriophage P22 procapsid provides insights into the mechanism of assembly
Liu, H.R., Xiao, H.To be published.
9KYW
The scaffold C-loop of phage P22
- PDB DOI: https://doi.org/10.2210/pdb9KYW/pdb
- EM Map EMD-61461: EMDB EMDataResource
- Classification: VIRAL PROTEIN
- Organism(s): Salmonella phage P22
- Mutation(s): No
- Deposited: 2024-12-09 Released: 2025-02-26
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 6.70 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Scaffolding protein | 303 | Salmonella phage P22 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P26748 (Salmonella phage P22) Explore P26748 Go to UniProtKB: P26748 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P26748 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Portal protein | B, C [auth L] | 725 | Salmonella phage P22 | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P26744 (Salmonella phage P22) Explore P26744 Go to UniProtKB: P26744 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P26744 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 6.70 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.19.2_4158 |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 12034006 |
| National Natural Science Foundation of China (NSFC) | China | 32430020 |
| National Natural Science Foundation of China (NSFC) | China | 32371263 |
| National Natural Science Foundation of China (NSFC) | China | 32401014 |
| National Natural Science Foundation of China (NSFC) | China | 32200994 |
Revision History (Full details and data files)
- Version 1.0: 2025-02-26
Type: Initial release
