9GHB | pdb_00009ghb

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
P [auth J]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
Q [auth K]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
Y [auth S]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
AA [auth U]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
FA [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
FA [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
GA [auth d]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
HA [auth e]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
IA [auth f]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
JA [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
JA [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
LA [auth i]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
MA [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
NA [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
OA [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
PA [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
QA [auth n]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
RA [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
SA [auth p]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
TA [auth q]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
UA [auth r]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
VA [auth s]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
WA [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
XA [auth u]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
YA [auth v]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
ZA [auth w]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
AB [auth x]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
BB [auth y]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
CB [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
J [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
J [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
K [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
L [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
L [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
L [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
M [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
N [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
N [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
O [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
O [auth I]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
P [auth J]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
P [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
Q [auth K]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
Q [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
R [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
R [auth L]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
S [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
S [auth M]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
B [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
T [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
U [auth O]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
U [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
V [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
V [auth P]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
W [auth Q]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
W [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
X [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
X [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
Y [auth S]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Y [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
Z [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
Z [auth T]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
Z [auth T]PF00467KOW motif (KOW)KOW motif- Family
AA [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
AA [auth U]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
BA [auth W]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Domain
BA [auth W]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
BA [auth W]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. Domain
BA [auth W]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
BA [auth W]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. Domain
BA [auth W]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
CA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
C [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
D [auth 3]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
E [auth 4]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
H [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
I [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
I [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domainDomain
I [auth C]PF07650KH domain (KH_2)KH domainDomain
I [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L33
J [auth D]30S ribosomal protein S4
K [auth E]30S ribosomal protein S5
L [auth F]30S ribosomal protein S6
M [auth G]30S ribosomal protein S7
N [auth H]30S ribosomal protein S8
O [auth I]30S ribosomal protein S9
P [auth J]30S ribosomal protein S10
Q [auth K]Small ribosomal subunit protein uS11
R [auth L]30S ribosomal protein S12
S [auth M]30S ribosomal protein S13
B [auth 1]50S ribosomal protein L34
T [auth N]30S ribosomal protein S14
U [auth O]30S ribosomal protein S15
V [auth P]30S ribosomal protein S16
W [auth Q]30S ribosomal protein S17
X [auth R]30S ribosomal protein S18
Y [auth S]30S ribosomal protein S19
Z [auth T]30S ribosomal protein S20
AA [auth U]30S ribosomal protein S21
BA [auth W]Elongation factor G
CA [auth Z]tRNA---
C [auth 2]50S ribosomal protein L35
DA [auth a]23S rRNA---
EA [auth b]5S rRNA---
FA [auth c]50S ribosomal protein L2
GA [auth d]50S ribosomal protein L3
HA [auth e]50S ribosomal protein L4
IA [auth f]50S ribosomal protein L5
JA [auth g]50S ribosomal protein L6
KA [auth h]50S ribosomal protein L9
LA [auth i]50S ribosomal protein L13
MA [auth j]50S ribosomal protein L14
D [auth 3]50S ribosomal protein L36
NA [auth k]50S ribosomal protein L15
OA [auth l]Large ribosomal subunit protein uL16
PA [auth m]50S ribosomal protein L17
QA [auth n]50S ribosomal protein L18
RA [auth o]50S ribosomal protein L19
SA [auth p]50S ribosomal protein L20
TA [auth q]50S ribosomal protein L21
UA [auth r]50S ribosomal protein L22
VA [auth s]50S ribosomal protein L23
WA [auth t]50S ribosomal protein L24
E [auth 4]50S ribosomal protein L31
XA [auth u]50S ribosomal protein L25
YA [auth v]50S ribosomal protein L27
ZA [auth w]50S ribosomal protein L28
AB [auth x]50S ribosomal protein L29
BB [auth y]50S ribosomal protein L30
CB [auth z]50S ribosomal protein L32
F [auth 9]mRNA---
G [auth A]16S rRNA---
H [auth B]30S ribosomal protein S2
I [auth C]30S ribosomal protein S3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
A [auth 0]IPR001705Large ribosomal subunit protein bL33Family
A [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
J [auth D]IPR002942RNA-binding S4 domainDomain
J [auth D]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
J [auth D]IPR022801Small ribosomal subunit protein uS4Family
J [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth E]IPR000851Small ribosomal subunit protein uS5Family
K [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
K [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
K [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
K [auth E]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
K [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth F]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
L [auth F]IPR000529Small ribosomal subunit protein bS6Family
L [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
L [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
L [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
M [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
M [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
M [auth G]IPR000235Small ribosomal subunit protein uS7Family
M [auth G]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
M [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
N [auth H]IPR000630Small ribosomal subunit protein uS8Family
N [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
N [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
O [auth I]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
O [auth I]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
O [auth I]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
O [auth I]IPR000754Small ribosomal subunit protein uS9Family
O [auth I]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
P [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
P [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
P [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
P [auth J]IPR001848Small ribosomal subunit protein uS10Family
Q [auth K]IPR001971Small ribosomal subunit protein uS11Family
Q [auth K]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
Q [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Q [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
R [auth L]IPR005679Ribosomal protein uS12, bacterial-typeFamily
R [auth L]IPR006032Small ribosomal subunit protein uS12Family
R [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
S [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
S [auth M]IPR001892Small ribosomal subunit protein uS13Family
S [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
S [auth M]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
B [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 1]IPR000271Large ribosomal subunit protein bL34Family
T [auth N]IPR001209Small ribosomal subunit protein uS14Family
T [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
T [auth N]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
U [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
U [auth O]IPR000589Small ribosomal subunit protein uS15Family
U [auth O]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
V [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
V [auth P]IPR000307Small ribosomal subunit protein bS16Family
V [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
W [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
W [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
W [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth Q]IPR000266Small ribosomal subunit protein uS17Family
X [auth R]IPR001648Small ribosomal subunit protein bS18Family
X [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
X [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Y [auth S]IPR002222Small ribosomal subunit protein uS19Family
Y [auth S]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
Y [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Y [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Z [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
Z [auth T]IPR002583Small ribosomal subunit protein bS20Family
AA [auth U]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
AA [auth U]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
AA [auth U]IPR001911Small ribosomal subunit protein bS21Family
BA [auth W]IPR005225Small GTP-binding domainDomain
BA [auth W]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
BA [auth W]IPR004540Translation elongation factor EFG/EF2Family
BA [auth W]IPR000795Translational (tr)-type GTP-binding domainDomain
BA [auth W]IPR000640Elongation factor EFG, domain V-likeDomain
BA [auth W]IPR031157Tr-type G domain, conserved siteConserved Site
BA [auth W]IPR009022Elongation factor G, domain IIIDomain
BA [auth W]IPR035647EF-G domain III/V-likeHomologous Superfamily
BA [auth W]IPR041095Elongation Factor G, domain IIDomain
BA [auth W]IPR004161Translation elongation factor EFTu-like, domain 2Domain
BA [auth W]IPR047872Elongation factor G, domain IVDomain
BA [auth W]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth W]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
BA [auth W]IPR035649EFG, domain VDomain
BA [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BA [auth W]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
C [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
C [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
C [auth 2]IPR001706Large ribosomal subunit protein bL35Family
C [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
FA [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
FA [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
FA [auth c]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
FA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
FA [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
FA [auth c]IPR002171Large ribosomal subunit protein uL2Family
GA [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
GA [auth d]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
GA [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth d]IPR000597Large ribosomal subunit protein uL3Family
HA [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
HA [auth e]IPR002136Large ribosomal subunit protein uL4Family
HA [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IA [auth f]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IA [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IA [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IA [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IA [auth f]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IA [auth f]IPR002132Large ribosomal subunit protein uL5Family
JA [auth g]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
JA [auth g]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
JA [auth g]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
JA [auth g]IPR000702Large ribosomal subunit protein uL6-likeFamily
JA [auth g]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
KA [auth h]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
KA [auth h]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
KA [auth h]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
KA [auth h]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
KA [auth h]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
KA [auth h]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
KA [auth h]IPR000244Large ribosomal subunit protein bL9Family
LA [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
LA [auth i]IPR005822Large ribosomal subunit protein uL13Family
LA [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
LA [auth i]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
MA [auth j]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
MA [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
MA [auth j]IPR000218Large ribosomal subunit protein uL14Family
MA [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
D [auth 3]IPR000473Large ribosomal subunit protein bL36Family
D [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
NA [auth k]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
NA [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
NA [auth k]IPR030878Large ribosomal subunit protein uL15Family
NA [auth k]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
NA [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
OA [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
OA [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
OA [auth l]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
OA [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
OA [auth l]IPR047873Large ribosomal subunit protein uL16Family
PA [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
PA [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
PA [auth m]IPR000456Large ribosomal subunit protein bL17Family
QA [auth n]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
QA [auth n]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
RA [auth o]IPR001857Large ribosomal subunit protein bL19Family
RA [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
RA [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
RA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
SA [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
SA [auth p]IPR005813Large ribosomal subunit protein bL20Family
TA [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
TA [auth q]IPR001787Large ribosomal subunit protein bL21Family
TA [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
TA [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
UA [auth r]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
UA [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
UA [auth r]IPR001063Large ribosomal subunit protein uL22Family
UA [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
UA [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
VA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
VA [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
VA [auth s]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
VA [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
WA [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
WA [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WA [auth t]IPR003256Large ribosomal subunit protein uL24Family
WA [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
WA [auth t]IPR005824KOWDomain
WA [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
E [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
E [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
E [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
E [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
XA [auth u]IPR020055Ribosomal protein bL25, short-formFamily
XA [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
XA [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
XA [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
XA [auth u]IPR050070Bact_ribosom_prot_bL25Unknown
YA [auth v]IPR001684Large ribosomal subunit protein bL27Family
YA [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
ZA [auth w]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
ZA [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
ZA [auth w]IPR026569Large ribosomal subunit protein bL28Family
ZA [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AB [auth x]IPR050063Universal ribosomal protein uL29Family
AB [auth x]IPR001854Large ribosomal subunit protein uL29Family
AB [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AB [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
BB [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
BB [auth y]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
BB [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
BB [auth y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
CB [auth z]IPR002677Large ribosomal subunit protein bL32Family
CB [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CB [auth z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
H [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
H [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
H [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
H [auth B]IPR001865Small ribosomal subunit protein uS2Family
I [auth C]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
I [auth C]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
I [auth C]IPR004087K Homology domainDomain
I [auth C]IPR004044K Homology domain, type 2Domain
I [auth C]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
I [auth C]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
I [auth C]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
I [auth C]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
Q [auth K]IAS
R [auth L]D2T Parent Component: ASP

DA [auth a]1MG Parent Component: G

DA [auth a]2MA Parent Component: A

DA [auth a]2MG Parent Component: G

DA [auth a]3TD Parent Component: U

DA [auth a]5MC Parent Component: C

DA [auth a]5MU Parent Component: U

DA [auth a]6MZ Parent Component: A

DA [auth a]G7M Parent Component: G

DA [auth a]H2U Parent Component: U

DA [auth a]OMC Parent Component: C

DA [auth a]OMG Parent Component: G

DA [auth a]OMU Parent Component: U

DA [auth a]PSU Parent Component: U

GA [auth d]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
OA [auth l]4D4 Parent Component: ARG

RESIDAA0071

OA [auth l]MS6 RESIDAA0071

G [auth A]2MG Parent Component: G

RESIDAA0071

G [auth A]4OC Parent Component: C

RESIDAA0071

G [auth A]5MC Parent Component: C

RESIDAA0071

G [auth A]G7M Parent Component: G

RESIDAA0071

G [auth A]MA6 Parent Component: A

RESIDAA0071

G [auth A]PSU Parent Component: U

RESIDAA0071

G [auth A]UR3 Parent Component: U

RESIDAA0071

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