9NLJ | pdb_00009nlj

E.coli Initiation complex with Uup-EQ2


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 13]Large ribosomal subunit protein uL13
F [auth 18]Large ribosomal subunit protein uL18
G [auth 19]50S ribosomal protein L19
H [auth 2]50S ribosomal protein L2
J [auth 21]Large ribosomal subunit protein bL21
N [auth 25]Large ribosomal subunit protein bL25
O [auth 27]Large ribosomal subunit protein bL27
S [auth 30]50S ribosomal protein L30
V [auth 33]Large ribosomal subunit protein bL33
X [auth 35]Large ribosomal subunit protein bL35
Y [auth 36]50S ribosomal protein L36
BA [auth 6]Large ribosomal subunit protein uL6
FA [auth R3]16S ribosomal RNA---
GA [auth sb]Small ribosomal subunit protein uS2
IA [auth sd]30S ribosomal protein S4
MA [auth sh]30S ribosomal protein S8
NA [auth si]Small ribosomal subunit protein uS9
SA [auth sn]Small ribosomal subunit protein uS14
TA [auth so]Small ribosomal subunit protein uS15
UA [auth sp]Small ribosomal subunit protein bS16
WA [auth sr]30S ribosomal protein S18
K [auth 22]Large ribosomal subunit protein uL22
L [auth 23]Large ribosomal subunit protein uL23
M [auth 24]Large ribosomal subunit protein uL24
P [auth 28]50S ribosomal protein L28
Q [auth 29]Large ribosomal subunit protein uL29
R [auth 3]50S ribosomal protein L3
B [auth 14]50S ribosomal protein L14
T [auth 31]Large ribosomal subunit protein bL31
U [auth 32]50S ribosomal protein L32
W [auth 34]50S ribosomal protein L34
Z [auth 4]Large ribosomal subunit protein uL4
AA [auth 5]50S ribosomal protein L5
CA [auth 9]Large ribosomal subunit protein bL9
C [auth 15]Large ribosomal subunit protein uL15
DA [auth R1]23S ribosomal RNA---
EA [auth R2]5S ribosomal RNA---
HA [auth sc]Small ribosomal subunit protein uS3
JA [auth se]Small ribosomal subunit protein uS5
KA [auth sf]30S ribosomal protein S6, non-modified isoform
LA [auth sg]30S ribosomal protein S7
D [auth 16]50S ribosomal protein L16
OA [auth sj]30S ribosomal protein S10
PA [auth sk]Small ribosomal subunit protein uS11
QA [auth sl]Small ribosomal subunit protein uS12
RA [auth sm]30S ribosomal protein S13
VA [auth sq]Small ribosomal subunit protein uS17
E [auth 17]Large ribosomal subunit protein bL17
XA [auth ss]30S ribosomal protein S19
YA [auth st]30S ribosomal protein S20
ZA [auth su]Small ribosomal subunit protein bS21
AB [auth T]tRNA---
BB [auth U]Uup---
CB [auth 1]Large ribosomal subunit protein uL1
DB [auth M]mRNA---
I [auth 20]Large ribosomal subunit protein bL20

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 13]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
A [auth 13]IPR005822Large ribosomal subunit protein uL13Family
A [auth 13]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
A [auth 13]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
F [auth 18]IPR005484Large ribosomal subunit protein uL18Family
F [auth 18]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
G [auth 19]IPR001857Large ribosomal subunit protein bL19Family
G [auth 19]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
G [auth 19]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
G [auth 19]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth 2]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
H [auth 2]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth 2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth 2]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
H [auth 2]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
H [auth 2]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth 2]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
H [auth 2]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
H [auth 2]IPR002171Large ribosomal subunit protein uL2Family
J [auth 21]IPR028909Large ribosomal subunit protein bL21-likeFamily
J [auth 21]IPR001787Large ribosomal subunit protein bL21Family
J [auth 21]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
J [auth 21]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
N [auth 25]IPR020055Ribosomal protein bL25, short-formFamily
N [auth 25]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
N [auth 25]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
N [auth 25]IPR050070Bacterial ribosomal protein bL25Family
N [auth 25]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
O [auth 27]IPR001684Large ribosomal subunit protein bL27Family
O [auth 27]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
S [auth 30]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
S [auth 30]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
S [auth 30]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
S [auth 30]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
V [auth 33]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
V [auth 33]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
V [auth 33]IPR001705Large ribosomal subunit protein bL33Family
V [auth 33]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
X [auth 35]IPR021137Large ribosomal subunit protein bL35-likeFamily
X [auth 35]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
X [auth 35]IPR001706Large ribosomal subunit protein bL35Family
X [auth 35]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
Y [auth 36]IPR000473Large ribosomal subunit protein bL36Family
Y [auth 36]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
BA [auth 6]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
BA [auth 6]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
BA [auth 6]IPR000702Large ribosomal subunit protein uL6-likeFamily
BA [auth 6]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
BA [auth 6]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
GA [auth sb]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
GA [auth sb]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
GA [auth sb]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
GA [auth sb]IPR001865Small ribosomal subunit protein uS2Family
IA [auth sd]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IA [auth sd]IPR002942RNA-binding S4 domainDomain
IA [auth sd]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IA [auth sd]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IA [auth sd]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IA [auth sd]IPR022801Small ribosomal subunit protein uS4Family
MA [auth sh]IPR000630Small ribosomal subunit protein uS8Family
MA [auth sh]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
MA [auth sh]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
NA [auth si]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
NA [auth si]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
NA [auth si]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
NA [auth si]IPR000754Small ribosomal subunit protein uS9Family
NA [auth si]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
SA [auth sn]IPR001209Small ribosomal subunit protein uS14Family
SA [auth sn]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
SA [auth sn]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
TA [auth so]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
TA [auth so]IPR000589Small ribosomal subunit protein uS15Family
TA [auth so]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
UA [auth sp]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
UA [auth sp]IPR000307Small ribosomal subunit protein bS16Family
UA [auth sp]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
WA [auth sr]IPR001648Small ribosomal subunit protein bS18Family
WA [auth sr]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
WA [auth sr]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
K [auth 22]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
K [auth 22]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
K [auth 22]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
K [auth 22]IPR001063Large ribosomal subunit protein uL22Family
K [auth 22]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
L [auth 23]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth 23]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
L [auth 23]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
L [auth 23]IPR013025Large ribosomal subunit protein uL23-likeFamily
M [auth 24]IPR003256Large ribosomal subunit protein uL24Family
M [auth 24]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
M [auth 24]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth 24]IPR005824KOWDomain
M [auth 24]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth 24]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
P [auth 28]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
P [auth 28]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
P [auth 28]IPR026569Large ribosomal subunit protein bL28Family
P [auth 28]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Q [auth 29]IPR050063Universal ribosomal protein uL29Family
Q [auth 29]IPR001854Large ribosomal subunit protein uL29Family
Q [auth 29]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Q [auth 29]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
R [auth 3]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
R [auth 3]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
R [auth 3]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
R [auth 3]IPR000597Large ribosomal subunit protein uL3Family
B [auth 14]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
B [auth 14]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
B [auth 14]IPR000218Large ribosomal subunit protein uL14Family
B [auth 14]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
T [auth 31]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
T [auth 31]IPR027491Large ribosomal subunit protein bL31 type AFamily
T [auth 31]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
T [auth 31]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
U [auth 32]IPR002677Large ribosomal subunit protein bL32Family
U [auth 32]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth 32]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
W [auth 34]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
W [auth 34]IPR000271Large ribosomal subunit protein bL34Family
Z [auth 4]IPR013005Large ribosomal subunit protein uL4-likeFamily
Z [auth 4]IPR002136Large ribosomal subunit protein uL4Family
Z [auth 4]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AA [auth 5]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AA [auth 5]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AA [auth 5]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AA [auth 5]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AA [auth 5]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
AA [auth 5]IPR002132Large ribosomal subunit protein uL5Family
CA [auth 9]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
CA [auth 9]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
CA [auth 9]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
CA [auth 9]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
CA [auth 9]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
CA [auth 9]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
CA [auth 9]IPR000244Large ribosomal subunit protein bL9Family
C [auth 15]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
C [auth 15]IPR021131Large ribosomal subunit protein uL15/eL18Domain
C [auth 15]IPR030878Large ribosomal subunit protein uL15Family
C [auth 15]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
C [auth 15]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
HA [auth sc]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
HA [auth sc]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
HA [auth sc]IPR004087K Homology domainDomain
HA [auth sc]IPR004044K Homology domain, type 2Domain
HA [auth sc]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
HA [auth sc]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
HA [auth sc]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
HA [auth sc]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
JA [auth se]IPR000851Small ribosomal subunit protein uS5Family
JA [auth se]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
JA [auth se]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
JA [auth se]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
JA [auth se]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
JA [auth se]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
JA [auth se]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KA [auth sf]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
KA [auth sf]IPR000529Small ribosomal subunit protein bS6Family
KA [auth sf]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
KA [auth sf]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
KA [auth sf]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
LA [auth sg]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
LA [auth sg]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
LA [auth sg]IPR000235Small ribosomal subunit protein uS7Family
LA [auth sg]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
LA [auth sg]IPR023798Small ribosomal subunit protein uS7 domainDomain
D [auth 16]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
D [auth 16]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
D [auth 16]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
D [auth 16]IPR016180Large ribosomal subunit protein uL16 domainDomain
D [auth 16]IPR047873Large ribosomal subunit protein uL16Family
OA [auth sj]IPR001848Small ribosomal subunit protein uS10Family
OA [auth sj]IPR027486Small ribosomal subunit protein uS10 domainDomain
OA [auth sj]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
OA [auth sj]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
PA [auth sk]IPR001971Small ribosomal subunit protein uS11Family
PA [auth sk]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
PA [auth sk]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
PA [auth sk]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
QA [auth sl]IPR006032Small ribosomal subunit protein uS12Family
QA [auth sl]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
QA [auth sl]IPR005679Ribosomal protein uS12, bacterial-typeFamily
RA [auth sm]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
RA [auth sm]IPR001892Small ribosomal subunit protein uS13Family
RA [auth sm]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
RA [auth sm]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
RA [auth sm]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
VA [auth sq]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
VA [auth sq]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
VA [auth sq]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
VA [auth sq]IPR000266Small ribosomal subunit protein uS17Family
E [auth 17]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
E [auth 17]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
E [auth 17]IPR000456Large ribosomal subunit protein bL17Family
XA [auth ss]IPR002222Small ribosomal subunit protein uS19Family
XA [auth ss]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
XA [auth ss]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
XA [auth ss]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
YA [auth st]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
YA [auth st]IPR002583Small ribosomal subunit protein bS20Family
ZA [auth su]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
ZA [auth su]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
ZA [auth su]IPR001911Small ribosomal subunit protein bS21Family
CB [auth 1]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
CB [auth 1]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
CB [auth 1]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
CB [auth 1]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
CB [auth 1]IPR002143Large ribosomal subunit protein uL1Family
CB [auth 1]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
I [auth 20]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
I [auth 20]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
I [auth 20]IPR005813Large ribosomal subunit protein bL20Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
AB [auth T]4OC Parent Component: C

AB [auth T]4SU Parent Component: U

AB [auth T]5MU Parent Component: U

AB [auth T]FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
AB [auth T]H2U Parent Component: U

RESIDAA0021 , AA0566

AB [auth T]PSU Parent Component: U

RESIDAA0021 , AA0566

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