7R3H

PROSS optimitzed variant of RhlR (75 mutations) in complex with native autoinducer C4-HSL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.49 ?
  • R-Value Free: 0.270 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.225 

Starting Model: in silico
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Moonlighting chaperone activity of the enzyme PqsE contributes to RhlR-controlled virulence of Pseudomonas aeruginosa.

Borgert, S.R.Henke, S.Witzgall, F.Schmelz, S.Zur Lage, S.Hotop, S.K.Stephen, S.Lubken, D.Kruger, J.Gomez, N.O.van Ham, M.Jansch, L.Kalesse, M.Pich, A.Bronstrup, M.Haussler, S.Blankenfeldt, W.

(2022) Nat Commun 13: 7402-7402

  • DOI: https://doi.org/10.1038/s41467-022-35030-w
  • Primary Citation of Related Structures:  
    7R3E, 7R3F, 7R3G, 7R3H, 7R3I, 7R3J, 8B4A

  • PubMed Abstract: 

    Pseudomonas aeruginosa is a major cause of nosocomial infections and also leads to severe exacerbations in cystic fibrosis or chronic obstructive pulmonary disease. Three intertwined quorum sensing systems control virulence of P. aeruginosa, with the rhl circuit playing the leading role in late and chronic infections. The majority of traits controlled by rhl transcription factor RhlR depend on PqsE, a dispensable thioesterase in Pseudomonas Quinolone Signal (PQS) biosynthesis that interferes with RhlR through an enigmatic mechanism likely involving direct interaction of both proteins. Here we show that PqsE and RhlR form a 2:2 protein complex that, together with RhlR agonist N-butanoyl-L-homoserine lactone (C4-HSL), solubilizes RhlR and thereby renders the otherwise insoluble transcription factor active. We determine crystal structures of the complex and identify residues essential for the interaction. To corroborate the chaperone-like activity of PqsE, we design stability-optimized variants of RhlR that bypass the need for C4-HSL and PqsE in activating PqsE/RhlR-controlled processes of P. aeruginosa. Together, our data provide insight into the unique regulatory role of PqsE and lay groundwork for developing new P. aeruginosa-specific pharmaceuticals.


  • Organizational Affiliation

    Department Structure and Function of Proteins, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124, Braunschweig, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROSS optimized variant of RhlR with 75 mutationsA [auth B],
B [auth A],
C,
D
241Pseudomonas aeruginosa PAO1Mutation(s): 0 
UniProt
Find proteins for P54292 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P54292 
Go to UniProtKB:  P54292
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP54292
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.49 ?
  • R-Value Free: 0.270 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.225 
  • Space Group: P 21 21 21
Unit Cell:
Length ( ? )Angle ( ? )
a = 87.952¦Á = 90
b = 91.56¦Â = 90
c = 117.329¦Ă = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany281361126/GRK2223

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-14
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Refinement description
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