Download MendeleyCrystal structure of the small zinc-finger protein ZifS (TTHA0897) from Thermus thermophilus HB8.
Kurinami, S., Fukui, K., Murakawa, T., Baba, S., Kumasaka, T., Okanishi, H., Kanai, Y., Yano, T., Masui, R.To be published.
8YOZ | pdb_00008yoz
Crystal structure of the small zinc-finger protein ZifS (TTHA0897) from Thermus thermophilus HB8.
- PDB DOI: https://doi.org/10.2210/pdb8YOZ/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-03-14 Released: 2025-03-19
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.83 ?
- R-Value Free: 0.264 (Depositor), 0.264 (DCC)
- R-Value Work: 0.233 (Depositor), 0.233 (DCC)
- R-Value Observed: 0.234 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcription factor zinc-finger domain-containing protein | 82 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHA0897 |  | |
UniProt | |||||
Find proteins for Q5SJV5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJV5 Go to UniProtKB: Q5SJV5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SJV5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN (Subject of Investigation/LOI) Query on ZN | C [auth A], D [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.83 ?
- R-Value Free: 0.264 (Depositor), 0.264 (DCC)
- R-Value Work: 0.233 (Depositor), 0.233 (DCC)
- R-Value Observed: 0.234 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 30.12 | ¦Á = 90 |
| b = 67.01 | ¦Â = 90 |
| c = 81.92 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| PHENIX | refinement |
| XDS | data reduction |
| PHENIX | model building |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-19 Deposition Author(s): Kurinami, S., Fukui, K., Murakawa, T., Baba, S., Kumasaka, T., Okanishi, H., Kanai, Y., Yano, T., Masui, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-03-19
Type: Initial release
