Download MendeleyStructural basis for immune cell binding of Fusobacterium nucleatum via the trimeric autotransporter adhesin CbpF
Marongiu, G.L., Fink, U., Schopf, F., Oder, A., von Kries, J.P., Roderer, D.(2025) Proc Natl Acad Sci U S A
9GH6 | pdb_00009gh6
CEACAM1 (35-234), focused refinement in the complex with CbpF
- PDB DOI: https://doi.org/10.2210/pdb9GH6/pdb
- EM Map EMD-51348: EMDB EMDataResource
- Classification: CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2024-08-15 Released: 2025-04-02
- Funding Organization(s): Leibniz Association
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.00 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Carcinoembryonic antigen-related cell adhesion molecule 1 | A [auth D] | 434 | Homo sapiens | Mutation(s): 0 Gene Names: CEACAM1, BGP, BGP1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P13688 (Homo sapiens) Explore P13688 Go to UniProtKB: P13688 | |||||
PHAROS: P13688 GTEx: ENSG00000079385 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13688 | ||||
Glycosylation | |||||
| Glycosylation Sites: 7 | Go to GlyGen: P13688-1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth D] C [auth D] D E [auth D] F [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.00 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.21-5207 |
| RECONSTRUCTION | cryoSPARC | 4.4.0 |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-04-02 Deposition Author(s): Marongiu, G.L., Fink, U., Roderer, D.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Leibniz Association | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-04-02
Type: Initial release - Version 1.1: 2025-04-16
Changes: Data collection, Database references
