3H3W

Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 dome-shaped baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	6_6th	e3h3wA1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
A	6_4th	e3h3wA3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
A	6_5th	e3h3wA2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
B	6_6th	e3h3wB1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
B	6_4th	e3h3wB3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
B	6_5th	e3h3wB2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
C	6_6th	e3h3wC1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
C	6_4th	e3h3wC3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
C	6_5th	e3h3wC2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
D	6_6th	e3h3wD1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
D	6_4th	e3h3wD3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
D	6_5th	e3h3wD2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
E	6_6th	e3h3wE1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
E	6_4th	e3h3wE3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
E	6_5th	e3h3wE2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
F	6_6th	e3h3wF1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
F	6_4th	e3h3wF3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
F	6_5th	e3h3wF2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
G	6_6th	e3h3wG1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
G	6_4th	e3h3wG3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
G	6_5th	e3h3wG2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
H	6_6th	e3h3wH1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
H	6_4th	e3h3wH3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
H	6_5th	e3h3wH2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
I	6_6th	e3h3wI1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
I	6_4th	e3h3wI3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
I	6_5th	e3h3wI2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
J	6_6th	e3h3wJ1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
J	6_4th	e3h3wJ3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
J	6_5th	e3h3wJ2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
K	6_6th	e3h3wK1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
K	6_4th	e3h3wK3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
K	6_5th	e3h3wK2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)
L	6_6th	e3h3wL1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: 6_6th	ECOD (1.6)
L	6_4th	e3h3wL3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: 6_4th	ECOD (1.6)
L	6_5th	e3h3wL2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: 6_5th	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21387	Baseplate structural protein gp6, C-terminal domain I (Gp6_C-I)	Baseplate structural protein gp6, C-terminal domain I	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain I, and adopts a 2-layer beta-sandwich fold.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21871	Baseplate structural protein gp6, C-terminal domain III (Gp6_C-III)	Baseplate structural protein gp6, C-terminal domain III	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain III.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21472	Baseplate structural protein gp6, C-terminal domain II (gp6_C-domII)	Baseplate structural protein gp6, C-terminal domain II	This entry represents domain II found in the C-terminal of gp6 from bacteriophage T4, which adopts a beta-barrel fold. This protein is involved in tail assembly. It forms the gp25-(gp6)2-gp7 module, involved in sheath contraction [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Baseplate structural protein Gp6	identical protein binding protein binding binding	virion assembly viral tail assembly viral process viral life cycle	virus tail virion component virus tail, baseplate

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR054065	Baseplate wedge protein gp6, C-terminal domain III	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR034698	Baseplate wedge protein gp6	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049027	Baseplate structural protein gp6, C-terminal domain I	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049026	Baseplate wedge protein gp6-like, N-terminal helical domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049028	Baseplate structural protein gp6, C-terminal domain II	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049029	Baseplate wedge protein gp6, domain II, first	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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3H3W

Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 dome-shaped baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage