Ternary complex of TGF-b1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Snake toxin-like | 8038457 | 3000545 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Snake toxin-like | 8038457 | 3000545 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Snake toxin-like | 8038457 | 3000545 | SCOP2B (2022-06-29) |
J [auth H] | SCOP2B Superfamily | Snake toxin-like | 8038457 | 3000545 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TGF_beta | e3kfdA1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
B | TGF_beta | e3kfdB1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
G [auth C] | TGF_beta | e3kfdC1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
H [auth D] | TGF_beta | e3kfdD1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
C [auth E] | ecTbetaR2 | e3kfdE1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: ecTbetaR2 | ECOD (1.6) |
D [auth F] | ecTbetaR2 | e3kfdF1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: ecTbetaR2 | ECOD (1.6) |
I [auth G] | ecTbetaR2 | e3kfdG1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: ecTbetaR2 | ECOD (1.6) |
J [auth H] | ecTbetaR2 | e3kfdH1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: ecTbetaR2 | ECOD (1.6) |
E [auth I] | Activin_recp | e3kfdI1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: Activin_recp | ECOD (1.6) |
F [auth J] | Activin_recp | e3kfdJ1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: Activin_recp | ECOD (1.6) |
K | Activin_recp | e3kfdK1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: Activin_recp | ECOD (1.6) |
L | Activin_recp | e3kfdL1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: Activin_recp | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
B | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
G [auth C] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
H [auth D] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
C [auth E] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
D [auth F] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
I [auth G] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
J [auth H] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
E [auth I] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
F [auth J] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
K | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
L | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, G [auth C], H [auth D] | PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | Domain | |
C [auth E], D [auth F], I [auth G], J [auth H] | PF08917 | Transforming growth factor beta receptor 2 ectodomain (ecTbetaR2) | Transforming growth factor beta receptor 2 ectodomain | The Transforming growth factor beta receptor 2 ectodomain is a compact fold consisting of nine beta-strands and a single helix stabilised by a network of six intra strand disulphide bonds. The folding topology includes a central five-stranded antipar ... | Domain |
E [auth I], F [auth J], K, L | PF01064 | Activin types I and II receptor domain (Activin_recp) | Activin types I and II receptor domain | This Pfam entry consists of both TGF-beta receptor types. This is an alignment of the hydrophilic cysteine-rich ligand-binding domains, Both receptor types, (type I and II) posses a 9 amino acid cysteine box, with the the consensus CCX{4-5}CN. The t ... | Domain |