8XVS | pdb_00008xvs

RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA-directed RNA polymerase II subunit RPB1
DNA-directed RNA polymerases I, II, and III subunit RPABC5
DNA-directed RNA polymerase II subunit RPB11-a
DNA-directed RNA polymerases I, II, and III subunit RPABC4
M [auth N]DNA---
N [auth T]DNA---
O [auth P]RNA---
P [auth a],
T [auth e]
Histone H3.1
Q [auth b],
U [auth f]
Histone H4
R [auth c],
V [auth g]
Histone H2A type 1-B/E
S [auth d],
W [auth h]
Histone H2B type 1-J
DNA-directed RNA polymerase II subunit RPB2
DNA-directed RNA polymerase II subunit RPB3
DNA-directed RNA polymerase II subunit RPB4
DNA-directed RNA polymerases I, II, and III subunit RPABC1
DNA-directed RNA polymerases I, II, and III subunit RPABC2
DNA-directed RNA polymerase II subunit RPB7
DNA-directed RNA polymerases I, II, and III subunit RPABC3
DNA-directed RNA polymerase II subunit RPB9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007081RNA polymerase Rpb1, domain 5Domain
IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
IPR007075RNA polymerase Rpb1, domain 6Domain
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
IPR007083RNA polymerase Rpb1, domain 4Domain
IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
IPR006592RNA polymerase, N-terminalDomain
IPR007066RNA polymerase Rpb1, domain 3Domain
IPR007073RNA polymerase Rpb1, domain 7Domain
IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
IPR000722RNA polymerase, alpha subunitDomain
IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
IPR007080RNA polymerase Rpb1, domain 1Domain
IPR023580RNA polymerase subunit RPB10Homologous Superfamily
IPR020789RNA polymerases, subunit N, zinc binding siteBinding Site
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10Family
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainDomain
IPR037685RNA polymerase RBP11Family
IPR022905DNA-directed RNA polymerase subunit Rpo11-likeFamily
IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved siteConserved Site
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4Family
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4Homologous Superfamily
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4Family
P [auth a],
T [auth e]
IPR009072Histone-foldHomologous Superfamily
P [auth a],
T [auth e]
IPR007125Histone H2A/H2B/H3Domain
P [auth a],
T [auth e]
IPR000164Histone H3/CENP-AFamily
Q [auth b],
U [auth f]
IPR009072Histone-foldHomologous Superfamily
Q [auth b],
U [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
Q [auth b],
U [auth f]
IPR001951Histone H4Family
Q [auth b],
U [auth f]
IPR019809Histone H4, conserved siteConserved Site
Q [auth b],
U [auth f]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
R [auth c],
V [auth g]
IPR009072Histone-foldHomologous Superfamily
R [auth c],
V [auth g]
IPR007125Histone H2A/H2B/H3Domain
R [auth c],
V [auth g]
IPR002119Histone H2AFamily
R [auth c],
V [auth g]
IPR032454Histone H2A, C-terminal domainDomain
R [auth c],
V [auth g]
IPR032458Histone H2A conserved siteConserved Site
S [auth d],
W [auth h]
IPR009072Histone-foldHomologous Superfamily
S [auth d],
W [auth h]
IPR007125Histone H2A/H2B/H3Domain
S [auth d],
W [auth h]
IPR000558Histone H2BFamily
S [auth d],
W [auth h]
IPR055333Histone H2B, conserved siteConserved Site
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
IPR007646RNA polymerase Rpb2, domain 4Domain
IPR007647RNA polymerase Rpb2, domain 5Domain
IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
IPR007642RNA polymerase Rpb2, domain 2Domain
IPR015712DNA-directed RNA polymerase, subunit 2Family
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
IPR007645RNA polymerase Rpb2, domain 3Domain
IPR007644RNA polymerase, beta subunit, protrusionDomain
IPR007641RNA polymerase Rpb2, domain 7Domain
IPR011262DNA-directed RNA polymerase, insert domainDomain
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
IPR050518Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase SubunitFamily
IPR022842DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1Family
IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved siteConserved Site
IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
IPR005574RNA polymerase subunit Rpb4/RPC9Family
IPR010997HRDC-like superfamilyHomologous Superfamily
IPR006590RNA polymerase Rpb4/RPC9, coreDomain
IPR038324Rpb4/RPC9 superfamilyHomologous Superfamily
IPR045222DNA-directed RNA polymerase II subunit Rpb4-likeFamily
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5Family
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyHomologous Superfamily
IPR035913RPB5-like RNA polymerase subunit superfamilyHomologous Superfamily
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalDomain
IPR020608RNA polymerase, subunit H/Rpb5, conserved siteConserved Site
IPR005571RNA polymerase, Rpb5, N-terminalDomain
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved siteConserved Site
IPR028363DNA-directed RNA polymerase, subunit RPB6Family
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitFamily
IPR003029S1 domainDomain
IPR045113RNA polymerase subunit Rpb7-likeFamily
IPR005576RNA polymerase Rpb7-like , N-terminalDomain
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyHomologous Superfamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR005570DNA-directed RNA polymerases I, II, and III subunit RPABC3Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR001529DNA-directed RNA polymerase II subunit RPB9-like, zinc ribbonDomain
IPR012164DNA-directed RNA polymerase subunit/transcription factor SFamily
IPR001222Zinc finger, TFIIS-typeDomain
IPR034012Pol II subunit B9, C-terminal zinc ribbonDomain
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP24928
PharosP62875
PharosP53803
P [auth a],
T [auth e]
PharosP68431
Q [auth b],
U [auth f]
PharosP62805
R [auth c],
V [auth g]
PharosP04908
S [auth d],
W [auth h]
PharosP06899
PharosP30876
PharosP19387
PharosO15514
PharosP19388
PharosP61218
PharosP62487
PharosP52434
PharosP36954
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