1POZ
SOLUTION STRUCTURE OF THE HYALURONAN BINDING DOMAIN OF HUMAN CD44
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1 mM [U-13C; U-15N] protein | 95% H2O/5% D2O | <5mM | 6.5 | ambient | 298 | |
2 | 2D NOESY | 1 mM protein | 95% H2O/5% D2O | <5mM | 6.5 | ambient | 298 | |
3 | 2D NOESY | 1 mM protein | 100% D2O | <5mM | 6.5 | ambient | 298 | |
4 | 2D TOCSY | 1 mM protein | 95% H2O/5% D2O | <5mM | 6.5 | ambient | 298 | |
5 | HMQC-J | 1 mM [U-15N] protein | 95% H2O/5% D2O | <5mM | 6.5 | ambient | 298 | |
6 | CBCA(CO)NH | 1 mM [U-13C; U-15N] protein | 95% H2O/5% D2O | <5mM | 6.5 | ambient | 298 | |
7 | NH-Exchange HSQC | 1 mM [U-15N] protein | 100% D2O | <5mM | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | GE | OMEGA | 750 |
2 | GE | OMEGA | 600 |
3 | GE | OMEGA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics simulated annealing refinement by molecular dynamics | The structures are calculated from 2271 restraints, 2168 are NOE based, 47 dihedral constraints and 56 distance restraints from hydrogen bonds | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy,target function |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | Brunger, A.T. |
2 | processing | Felix | 2.3 | MSI, San Diego |
3 | structure solution | SOPHIE | 1.0 | Pickford, A.R. |
4 | data analysis | Sparky | 2.0 | Goddard, T.D. |
5 | data analysis | XEASY | 3.13 | Xia, T |
6 | refinement | SOPHIE | 1.0 | Pickford, A.R. |