Experiment: 2YDR

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2J62	PDB ENTRY 2J62

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		8.5		0.6 M NAAC, 0.175 M CDSO4, 0.1 M HEPES PH 7.5

Crystal Properties
Matthews coefficient	Solvent content
4.5	72

Symmetry
Space Group	P 61

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD		2010-08-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03		Diamond	I03

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.75	25	92.5	0.15	7.5	4.4		28111		2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.75	2.9	94.2		0.58	4.3	2.7

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2J62	2.75	25	27528	583	92.71	0.18579	0.18507	0.21881	RANDOM	28.56

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.47	0.73		1.47		-2.2

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.878
r_dihedral_angle_3_deg	16.106
r_sphericity_free	16.071
r_dihedral_angle_4_deg	15.683
r_dihedral_angle_1_deg	6.122
r_scangle_it	3.356
r_scbond_it	1.871
r_angle_refined_deg	1.425
r_mcangle_it	1.169
r_mcbond_it	0.563

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.878
r_dihedral_angle_3_deg	16.106
r_sphericity_free	16.071
r_dihedral_angle_4_deg	15.683
r_dihedral_angle_1_deg	6.122
r_scangle_it	3.356
r_scbond_it	1.871
r_angle_refined_deg	1.425
r_mcangle_it	1.169
r_mcbond_it	0.563
r_chiral_restr	0.095
r_bond_refined_d	0.013
r_gen_planes_refined	0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_bonded