4LF1 | pdb_00004lf1

Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with 2-CABP

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.5	293	60 mM Tris-HCl, 20 % (w/w) PEG 4000, and 10 % (v/v) glycerol , pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
2.09	41.19

Crystal Data

Unit Cell
Length ( ? )	Angle ( ? )
a = 75.033	�� = 66.51
b = 100.72	�� = 108.32
c = 100.69	�� = 95.41

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315		2006-09-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALS BEAMLINE 8.2.1	1.000	ALS	8.2.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.38	80	98.1	0.179	6.4	3.3		101179

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.38	2.47	97		0.563		3.2	10018

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.38	71.29	100509	5088	97.61	0.2658	0.2632	0.2633	0.3153	0.3134	RANDOM	14.8726

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.87	-0.32	0.53	-1.67	0.66	-1.92

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.634
r_dihedral_angle_3_deg	14.654
r_dihedral_angle_4_deg	14.155
r_dihedral_angle_1_deg	4.916
r_mcangle_it	4.784
r_scbond_it	4.219
r_mcbond_it	3.957
r_angle_refined_deg	1.577
r_chiral_restr	0.115
r_bond_refined_d	0.014

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.634
r_dihedral_angle_3_deg	14.654
r_dihedral_angle_4_deg	14.155
r_dihedral_angle_1_deg	4.916
r_mcangle_it	4.784
r_scbond_it	4.219
r_mcbond_it	3.957
r_angle_refined_deg	1.577
r_chiral_restr	0.115
r_bond_refined_d	0.014
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	21128
Nucleic Acid Atoms
Solvent Atoms	470
Heterogen Atoms	132

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
EPMR	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.