GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 3HDQ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3HDQ_GDU_A_500 | 83% | 3% | 0.125 | 0.985 | 2.66 | 3.56 | 5 | 15 | 0 | 0 | 100% | 0.8439 |
3HDQ_GDU_G_500 | 79% | 3% | 0.13 | 0.977 | 2.66 | 3.64 | 4 | 18 | 3 | 0 | 100% | 0.8619 |
3HDQ_GDU_F_500 | 71% | 2% | 0.136 | 0.956 | 2.7 | 3.7 | 4 | 21 | 2 | 0 | 100% | 1 |
3HDQ_GDU_E_500 | 68% | 3% | 0.144 | 0.955 | 2.7 | 3.53 | 4 | 16 | 1 | 0 | 100% | 1 |
3HDQ_GDU_C_500 | 67% | 3% | 0.136 | 0.943 | 2.72 | 3.55 | 4 | 17 | 1 | 0 | 100% | 1 |
3HDQ_GDU_H_500 | 66% | 3% | 0.145 | 0.951 | 2.76 | 3.43 | 5 | 14 | 1 | 0 | 100% | 1 |
3HDQ_GDU_J_500 | 66% | 3% | 0.148 | 0.953 | 2.66 | 3.64 | 3 | 17 | 2 | 0 | 100% | 1 |
3HDQ_GDU_I_500 | 59% | 2% | 0.157 | 0.94 | 2.65 | 3.73 | 4 | 18 | 2 | 0 | 100% | 1 |
3HDQ_GDU_D_500 | 57% | 3% | 0.156 | 0.932 | 2.72 | 3.62 | 6 | 17 | 3 | 0 | 100% | 1 |
3HDQ_GDU_B_500 | 55% | 3% | 0.158 | 0.928 | 2.66 | 3.6 | 4 | 18 | 3 | 0 | 100% | 1 |
3HDY_GDU_F_500 | 72% | 3% | 0.139 | 0.963 | 2.66 | 3.61 | 4 | 15 | 3 | 0 | 100% | 1 |
3UKF_GDU_H_802 | 100% | 14% | 0.043 | 0.992 | 1.94 | 1.89 | 12 | 10 | 3 | 0 | 100% | 1 |
4HO9_GDU_B_300 | 99% | 24% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 47% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 97% | 44% | 0.071 | 0.983 | 0.91 | 1.26 | 1 | 6 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 78% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |