Ligand validation:3VDB

DMS: DIMETHYL SULFOXIDE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
3VDB_DMS_B_8008	88%	26%	0.101	0.978	2.62	0.44	1	-	0	100%	1
3VDB_DMS_C_8010	87%	24%	0.105	0.976	2.66	0.5	1	-	0	100%	1
3VDB_DMS_B_8022	85%	25%	0.11	0.977	2.64	0.47	1	-	0	100%	1
3VDB_DMS_A_8009	85%	27%	0.118	0.985	2.61	0.4	1	-	0	100%	1
3VDB_DMS_B_8002	85%	28%	0.111	0.977	2.61	0.36	1	-	0	100%	1
3VDB_DMS_C_8020	84%	23%	0.098	0.96	2.67	0.55	1	-	0	100%	1
3VDB_DMS_A_8003	82%	27%	0.126	0.983	2.6	0.39	1	-	0	100%	1
3VDB_DMS_C_8006	82%	27%	0.127	0.982	2.59	0.41	1	-	0	100%	1
3VDB_DMS_D_8004	80%	26%	0.133	0.983	2.61	0.43	1	-	0	100%	1
3VDB_DMS_B_8009	79%	24%	0.126	0.971	2.67	0.48	1	-	0	100%	1
3VDB_DMS_A_8010	79%	25%	0.136	0.981	2.64	0.49	1	-	0	100%	1
3VDB_DMS_C_8014	78%	27%	0.138	0.98	2.61	0.37	1	-	0	100%	1
3VDB_DMS_C_8012	78%	26%	0.142	0.984	2.61	0.44	1	-	0	100%	1
3VDB_DMS_D_8006	73%	30%	0.144	0.973	2.55	0.31	1	-	0	100%	1
3VDB_DMS_A_8007	73%	24%	0.146	0.975	2.66	0.52	1	-	0	100%	1
3VDB_DMS_D_8011	73%	25%	0.153	0.982	2.61	0.48	1	-	0	100%	1
3VDB_DMS_B_8003	73%	24%	0.141	0.968	2.62	0.54	1	-	0	100%	1
3VDB_DMS_A_8005	73%	28%	0.157	0.984	2.58	0.38	1	-	0	100%	1
3VDB_DMS_B_8001	72%	31%	0.155	0.98	2.51	0.3	1	-	0	100%	1
3VDB_DMS_C_8011	69%	27%	0.139	0.955	2.59	0.43	1	-	3	100%	1
3VDB_DMS_B_8011	67%	26%	0.162	0.97	2.6	0.44	1	-	0	100%	1
3VDB_DMS_D_8015	64%	24%	0.165	0.965	2.65	0.53	1	-	0	100%	1
3VDB_DMS_C_8021	64%	26%	0.156	0.955	2.63	0.43	1	-	0	100%	1
3VDB_DMS_A_8016	62%	25%	0.149	0.94	2.64	0.47	1	-	0	100%	1
3VDB_DMS_D_8001	62%	25%	0.156	0.947	2.66	0.43	1	-	1	100%	1
3VDB_DMS_C_8002	61%	23%	0.175	0.966	2.56	0.69	1	-	2	100%	1
3VDB_DMS_C_8004	60%	24%	0.182	0.969	2.61	0.54	1	-	0	100%	1
3VDB_DMS_D_8014	59%	23%	0.175	0.957	2.65	0.6	1	-	0	100%	1
3VDB_DMS_C_8003	58%	24%	0.167	0.947	2.51	0.65	1	-	0	100%	1
3VDB_DMS_C_8017	56%	22%	0.157	0.928	2.65	0.64	1	-	0	100%	1
3VDB_DMS_D_8013	55%	23%	0.185	0.954	2.67	0.57	1	-	0	100%	1
3VDB_DMS_D_8002	55%	20%	0.187	0.956	2.6	0.83	1	-	0	100%	1
3VDB_DMS_A_8014	55%	24%	0.16	0.928	2.61	0.55	1	-	0	100%	1
3VDB_DMS_B_8012	55%	30%	0.194	0.962	2.6	0.28	1	-	0	100%	1
3VDB_DMS_C_8013	53%	28%	0.206	0.969	2.57	0.38	1	-	0	100%	1
3VDB_DMS_A_8004	51%	24%	0.184	0.939	2.6	0.55	1	-	0	100%	1
3VDB_DMS_D_8007	50%	23%	0.156	0.908	2.66	0.57	1	-	0	100%	1
3VDB_DMS_C_8007	50%	27%	0.191	0.943	2.6	0.42	1	-	0	100%	1
3VDB_DMS_B_8018	50%	24%	0.166	0.915	2.64	0.55	1	-	0	100%	1
3VDB_DMS_A_8001	49%	19%	0.201	0.949	2.58	0.9	1	-	1	100%	1
3VDB_DMS_B_8006	48%	25%	0.193	0.938	2.61	0.53	1	-	1	100%	1
3VDB_DMS_D_8005	47%	23%	0.2	0.942	2.63	0.59	1	-	0	100%	1
3VDB_DMS_C_8019	46%	22%	0.201	0.936	2.65	0.62	1	-	0	100%	1
3VDB_DMS_A_8011	45%	22%	0.204	0.938	2.68	0.63	1	-	0	100%	1
3VDB_DMS_D_8009	45%	21%	0.2	0.933	2.67	0.7	1	-	0	100%	1
3VDB_DMS_B_8004	44%	21%	0.203	0.933	2.6	0.73	1	-	0	100%	1
3VDB_DMS_B_8017	44%	23%	0.157	0.885	2.61	0.63	1	-	0	100%	1
3VDB_DMS_A_8008	44%	23%	0.184	0.91	2.63	0.62	1	-	0	100%	1
3VDB_DMS_D_8008	43%	22%	0.235	0.961	2.66	0.62	1	-	0	100%	1
3VDB_DMS_B_8014	43%	24%	0.179	0.903	2.63	0.53	1	-	0	100%	1
3VDB_DMS_C_8015	42%	24%	0.18	0.899	2.64	0.52	1	-	0	100%	1
3VDB_DMS_B_8007	41%	23%	0.192	0.909	2.68	0.56	1	-	1	100%	1
3VDB_DMS_C_8008	41%	26%	0.164	0.878	2.64	0.44	1	-	0	100%	1
3VDB_DMS_D_8010	41%	28%	0.231	0.946	2.55	0.42	1	-	0	100%	1
3VDB_DMS_D_8003	40%	24%	0.211	0.924	2.53	0.66	1	-	1	100%	1
3VDB_DMS_B_8021	40%	25%	0.208	0.919	2.64	0.49	1	-	0	100%	1
3VDB_DMS_A_8006	37%	24%	0.202	0.902	2.67	0.51	1	-	0	100%	1
3VDB_DMS_C_8005	37%	24%	0.214	0.914	2.59	0.59	1	-	0	100%	1
3VDB_DMS_A_8015	36%	25%	0.216	0.911	2.63	0.47	1	-	0	100%	1
3VDB_DMS_B_8005	34%	26%	0.239	0.926	2.6	0.44	1	-	0	100%	1
3VDB_DMS_B_8023	34%	25%	0.248	0.932	2.62	0.48	1	-	0	100%	1
3VDB_DMS_B_8019	33%	23%	0.227	0.905	2.67	0.56	1	-	1	100%	1
3VDB_DMS_B_8013	31%	25%	0.193	0.863	2.68	0.45	1	-	0	100%	1
3VDB_DMS_B_8010	31%	23%	0.186	0.854	2.65	0.59	1	-	0	100%	1
3VDB_DMS_C_8018	31%	24%	0.234	0.901	2.62	0.56	1	-	0	100%	1
3VDB_DMS_C_8009	30%	20%	0.223	0.889	2.63	0.8	1	-	0	100%	1
3VDB_DMS_A_8017	30%	23%	0.233	0.898	2.63	0.62	1	-	0	100%	1
3VDB_DMS_A_8002	29%	31%	0.251	0.908	2.54	0.29	1	-	1	100%	1
3VDB_DMS_A_8018	28%	23%	0.242	0.898	2.65	0.56	1	-	0	100%	1
3VDB_DMS_A_8013	27%	22%	0.235	0.882	2.65	0.63	1	-	0	100%	1
3VDB_DMS_C_8001	27%	25%	0.237	0.883	2.62	0.51	1	-	0	100%	1
3VDB_DMS_B_8020	26%	24%	0.254	0.899	2.67	0.51	1	-	0	100%	1
3VDB_DMS_A_8012	23%	23%	0.26	0.881	2.6	0.64	1	-	1	100%	1
3VDB_DMS_D_8012	21%	23%	0.289	0.899	2.66	0.59	1	-	0	100%	1
3VDB_DMS_C_8016	20%	23%	0.249	0.85	2.65	0.56	1	-	0	100%	1
3VDB_DMS_B_8016	19%	27%	0.294	0.892	2.57	0.42	1	-	0	100%	1
3VDB_DMS_B_8015	14%	23%	0.303	0.857	2.67	0.58	1	-	0	100%	1
1JYN_DMS_C_8401	100%	79%	0.039	0.995	0.61	0.27	-	-	0	100%	1
1JZ8_DMS_D_8401	100%	57%	0.038	0.993	1.24	0.43	-	-	0	100%	1
1JYW_DMS_C_8401	100%	75%	0.042	0.994	0.78	0.23	-	-	0	100%	1
1JZ7_DMS_B_8411	100%	69%	0.045	0.993	0.52	0.68	-	-	0	100%	1
3DYP_DMS_C_8401	100%	72%	0.048	0.996	0.96	0.15	-	-	0	100%	1
7P7D_DMS_A_906	100%	86%	0.042	0.993	0.36	0.37	-	-	0	100%	1
7GBT_DMS_A_1002	100%	86%	0.044	0.993	0.51	0.22	-	-	0	100%	1
7GEM_DMS_A_401	100%	84%	0.043	0.991	0.56	0.22	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

3VDB

DMS: DIMETHYL SULFOXIDE