Ligand validation:4DKO

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4DKO designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
4DKO_NAG_C_503	84%	62%	0.106	0.968	0.45	0.98	-	1	0	100%	0.9333
4DKO_NAG_A_503	77%	66%	0.115	0.953	0.51	0.79	-	-	0	100%	0.9333
4DKO_NAG_A_509	75%	70%	0.104	0.937	0.52	0.63	-	-	0	100%	0.9333
4DKO_NAG_A_505	72%	67%	0.105	0.929	0.5	0.76	-	-	0	100%	0.9333
4DKO_NAG_A_508	57%	67%	0.133	0.908	0.55	0.71	-	-	0	100%	0.9333
4DKO_NAG_A_501	50%	70%	0.152	0.902	0.55	0.62	-	-	0	100%	0.9333
4DKO_NAG_C_506	48%	70%	0.137	0.88	0.52	0.65	-	-	0	100%	0.9333
4DKO_NAG_C_509	47%	67%	0.148	0.888	0.51	0.76	-	-	0	100%	0.9333
4DKO_NAG_A_504	41%	70%	0.154	0.869	0.51	0.65	-	-	0	100%	0.9333
4DKO_NAG_A_507	38%	68%	0.148	0.851	0.51	0.71	-	-	0	100%	0.9333
4DKO_NAG_C_501	37%	68%	0.197	0.894	0.52	0.69	-	-	0	100%	0.9333
4DKO_NAG_A_506	32%	63%	0.221	0.895	0.49	0.93	-	-	0	100%	0.9333
4DKO_NAG_C_511	21%	66%	0.202	0.809	0.5	0.8	-	-	1	100%	0.9333
4DKO_NAG_C_505	20%	60%	0.18	0.78	0.51	1.02	-	1	0	100%	0.9333
4DKO_NAG_C_507	9%	68%	0.237	0.721	0.52	0.71	-	-	0	100%	0.9333
4DKO_NAG_C_510	5%	67%	0.337	0.736	0.5	0.76	-	-	0	100%	0.9333
4DKO_NAG_C_504	5%	67%	0.287	0.684	0.53	0.72	-	-	0	100%	0.9333
4DKO_NAG_A_510	3%	67%	0.354	0.672	0.54	0.74	-	1	0	100%	0.9333
4DKO_NAG_A_511	1%	68%	0.318	0.548	0.5	0.71	-	-	0	100%	0.9333
4DKO_NAG_C_502	1%	68%	0.362	0.556	0.53	0.7	-	-	0	100%	0.9333
4DKO_NAG_C_508	1%	65%	0.505	0.636	0.54	0.81	-	-	0	100%	0.9333
4DKO_NAG_A_502	0%	70%	0.42	0.457	0.53	0.61	-	-	0	100%	0.9333
4YFL_NAG_E_507	98%	70%	0.061	0.985	0.48	0.66	-	-	0	100%	0.9333
3SE8_NAG_G_734	94%	68%	0.063	0.961	0.56	0.68	-	-	0	100%	0.9333
4LSQ_NAG_G_503	93%	57%	0.065	0.96	0.58	1.07	-	1	0	100%	0.9333
7SX7_NAG_A_508	92%	71%	0.073	0.964	0.28	0.84	-	1	0	100%	0.9333
4DVW_NAG_A_503	91%	65%	0.087	0.973	0.51	0.81	-	-	1	100%	0.9333
3H0C_NAG_A_794	100%	56%	0.021	0.995	0.61	1.08	-	1	0	100%	0.9333
5LDS_NAG_C_1002	100%	69%	0.022	0.994	0.55	0.65	-	-	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	100%	0.9333
3GXM_NAG_A_498	100%	45%	0.026	0.992	0.75	1.34	-	2	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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4DKO

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4DKO designated by the RCSB