Ligand validation:4YDJ

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4YDJ designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
4YDJ_NAG_I_505	50%	87%	0.156	0.906	0.23	0.47	-	-	0	100%	0.9333
4YDJ_NAG_G_503	45%	88%	0.158	0.887	0.23	0.43	-	-	0	100%	0.9333
4YDJ_NAG_G_508	41%	90%	0.172	0.888	0.22	0.38	-	-	0	100%	0.9333
4YDJ_NAG_G_505	41%	83%	0.144	0.858	0.28	0.49	-	-	0	100%	0.9333
4YDJ_NAG_G_501	28%	88%	0.215	0.867	0.2	0.45	-	-	0	100%	0.9333
4YDJ_NAG_I_503	22%	89%	0.243	0.861	0.23	0.41	-	-	0	100%	0.9333
4YDJ_NAG_G_506	19%	86%	0.21	0.804	0.25	0.46	-	-	0	100%	0.9333
4YDJ_NAG_I_501	13%	87%	0.27	0.813	0.21	0.48	-	-	0	100%	0.9333
4YDJ_NAG_I_508	13%	86%	0.273	0.814	0.26	0.46	-	-	0	100%	0.9333
4YDJ_NAG_I_504	13%	87%	0.341	0.881	0.28	0.4	-	-	0	100%	0.9333
4YDJ_NAG_H_301	11%	85%	0.361	0.887	0.24	0.49	-	-	0	100%	0.9333
4YDJ_NAG_G_504	11%	88%	0.277	0.795	0.25	0.42	-	-	0	100%	0.9333
4YDJ_NAG_G_507	8%	86%	0.329	0.812	0.2	0.52	-	-	0	100%	0.9333
4YDJ_NAG_I_509	7%	86%	0.364	0.817	0.26	0.46	-	-	0	100%	0.9333
4YDJ_NAG_A_301	6%	86%	0.342	0.767	0.19	0.51	-	-	0	100%	0.9333
4YDJ_NAG_I_507	5%	85%	0.4	0.815	0.21	0.53	-	-	0	100%	0.9333
4YDJ_NAG_G_509	5%	83%	0.32	0.729	0.25	0.52	-	-	0	100%	0.9333
4YDJ_NAG_B_301	5%	88%	0.349	0.747	0.27	0.4	-	-	0	100%	0.9333
4YDJ_NAG_I_502	3%	88%	0.511	0.859	0.24	0.41	-	-	0	100%	0.9333
4YDJ_NAG_I_506	3%	88%	0.415	0.75	0.25	0.41	-	-	0	100%	0.9333
4YDJ_NAG_L_301	2%	87%	0.483	0.741	0.23	0.47	-	-	0	100%	0.9333
4YDJ_NAG_G_502	0%	68%	0.69	0.698	0.51	0.7	-	1	1	100%	0.9333
4YFL_NAG_E_507	98%	70%	0.061	0.985	0.48	0.66	-	-	0	100%	0.9333
3SE8_NAG_G_734	94%	68%	0.063	0.961	0.56	0.68	-	-	0	100%	0.9333
4LSQ_NAG_G_503	93%	57%	0.065	0.96	0.58	1.07	-	1	0	100%	0.9333
7SX7_NAG_A_508	92%	71%	0.073	0.964	0.28	0.84	-	1	0	100%	0.9333
4DVW_NAG_A_503	91%	65%	0.087	0.973	0.51	0.81	-	-	1	100%	0.9333
3H0C_NAG_A_794	100%	56%	0.021	0.995	0.61	1.08	-	1	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	100%	0.9333
3GXM_NAG_A_498	100%	45%	0.026	0.992	0.75	1.34	-	2	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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4YDJ

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4YDJ designated by the RCSB