Ligand validation:6DND

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 6DND designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
6DND_PLP_B_502	68%	7%	0.162	0.973	2.89	1.97	6	6	4	0	100%	0.875
6DND_PLP_A_502	48%	6%	0.222	0.967	2.97	2.11	3	7	3	0	100%	0.875
3II0_PLP_D_4	87%	22%	0.114	0.987	1.14	2.05	1	6	0	0	100%	1
8Z0E_PLP_B_501	84%	33%	0.091	0.951	1.24	1.42	3	3	0	0	100%	1
6LIG_PLP_B_501	44%	37%	0.22	0.951	1.18	1.3	1	3	0	0	100%	1
6DNA_PLP_D_502	22%	10%	0.285	0.901	2.42	1.93	3	6	2	0	100%	0.875
2BIE_PLP_A_1361	100%	38%	0.024	0.996	1.23	1.19	1	3	1	0	100%	1
2X3L_PLP_A_1211	100%	19%	0.024	0.995	1.74	1.73	2	2	1	0	100%	1
3CEJ_PLP_A_832	100%	41%	0.021	0.998	1.23	1.05	1	2	8	0	100%	1
3CEM_PLP_A_832	100%	41%	0.021	0.997	1.24	1.04	2	2	1	0	100%	1
4PPM_PLP_A_902	100%	7%	0.019	0.998	2.88	1.91	9	6	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.