Time-stamped Copies of PDB and EMDB Archives

01/08

A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as of January 1, 2020 has been added to ftp://snapshots.wwpdb.org and ftp://snapshots.pdbj.org. Snapshots have been archived annually since 2005 to provide readily identifiable data sets for research on the PDB archive.

The directory 20200101 includes the 159,140 experimentally-determined structure and experimental data available at that time. Atomic coordinate and related metadata are available in PDBx/mmCIF, PDB, and XML file formats. The date and time stamp of each file indicates the last time the file was modified. The snapshot of PDB Core archive is 575 GB.

A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub/databases/emdb/) as of January 1, 2020 can be found in ftp://ftp.ebi.ac.uk/pub/databases/emdb_vault/20200101/ and ftp://snapshots.pdbj.org/20200101/. The snapshot of EMDB Core archive contains map files and their metadata within XML files for both released and obsoleted entries (10370 and 130, respectively) and is 1.7 TB in size.

New Features Index

• 12/09 Explore Genome-Protein Relationships

• 12/03 Legacy API Shutdown December 9

• 11/23 Explore Improved Carbohydrate Data

• 10/27 Building Advanced Searches

• 10/20 Sequence Alignments in Search Results

• 10/13 Build Customize Tabular Reports of PDB Data

• 10/02 Documentation for New and Improved APIs

• 09/25 Search by Chemical Formula or Descriptor

• 09/22 wwPDB News: Updated Validation Reports for Released PDB Structures

• 09/16 Announcement: Legacy MyPDB Will Be Discontinued October 2020

• 08/25 Explore Sequence-Structure Relationships

• 08/11 Real Time Structural Search of the PDB

• 07/28 wwPDB News: Access Improved Carbohydrate Data at the PDB

• 07/21 Integrating PDB Data with NIH Common Fund Data Resources

• 07/08 Introducing a New Molecular Display

• 06/09 Sequence Motif Searching

• 05/12 Enter the Coronavirus CellPAINT Contest

• 05/07 Announcement: Legacy MyPDB Will Be Discontinued October 2020

• 05/05 Announcement: Legacy RCSB PDB APIs Will Be Discontinued November 2020

• 05/01 June 1: Retirement of Protein Workshop and Ligand Explorer

• 04/15 New APIs Replace REST Services

• 03/25 COVID-19/SARS-CoV-2 Resources

• 02/18 Improve Your Coordinates, Keep Your ID (Phase II)

• 01/14 NMR data distribution in a unified format at the PDB

• 01/08 Time-stamped Copies of PDB and EMDB Archives