Download MendeleyCrystal Structure of the Acyl-Enzyme Intermediate Oxa-13:Imipenem
Pernot, L., Mayer, C., Sougakoff, W.To be published.
1H5X
CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-13 COMPLEXED WITH IMIPENEM
- PDB DOI: https://doi.org/10.2210/pdb1H5X/pdb
- Classification: HYDROLASE
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2001-05-29 Released: 2002-05-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 ?
- R-Value Free: 0.246
- R-Value Work: 0.212
- R-Value Observed: 0.212
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BETA-LACTAMASE | 247 | Pseudomonas aeruginosa | Mutation(s): 0 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for Q51400 (Pseudomonas aeruginosa) Explore Q51400 Go to UniProtKB: Q51400 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q51400 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IM2 Query on IM2 | C [auth A], G [auth B] | (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox
ylic acid C12 H19 N3 O4 S UACUABDJLSUFFC-IWSPIJDZSA-N |  | ||
| SO4 Query on SO4 | D [auth A], E [auth A], F [auth A], H [auth B], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 ?
- R-Value Free: 0.246
- R-Value Work: 0.212
- R-Value Observed: 0.212
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 50.22 | ¦Á = 90 |
| b = 82.06 | ¦Â = 90 |
| c = 125.14 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2002-05-23 Deposition Author(s): Mayer, C., Pernot, L., Sougakoff, W.
Revision History (Full details and data files)
- Version 1.0: 2002-05-23
Type: Initial release - Version 1.1: 2011-07-27
Changes: Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance - Version 1.2: 2011-12-07
Changes: Non-polymer description - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
