Download MendeleyEffects of the Arg106==>Gly mutation on the catalytic and conformational cycle of Aquifex aeolicus KDO8P synthase.
Xu, X., Wang, J., Kona, F., Divvela, P., Stemmler, T., Gatti, D.L.To be published.
1T8X
r106g kdo8ps with pep and a5p
- PDB DOI: https://doi.org/10.2210/pdb1T8X/pdb
- Classification: TRANSFERASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2004-05-13 Released: 2005-06-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.242
- R-Value Work: 0.197
Starting Model: experimental
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This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-dehydro-3-deoxyphosphooctonate aldolase | 267 | Aquifex aeolicus | Mutation(s): 1 Gene Names: KDSA, AQ_085 EC: 2.5.1.55 |  | |
UniProt | |||||
Find proteins for O66496 (Aquifex aeolicus (strain VF5)) Explore O66496 Go to UniProtKB: O66496 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O66496 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| A5P Query on A5P | E [auth A] | ARABINOSE-5-PHOSPHATE C5 H13 O8 P VJDOAZKNBQCAGE-WDCZJNDASA-N |  | ||
| PEP Query on PEP | D [auth A], H [auth B] | PHOSPHOENOLPYRUVATE C3 H5 O6 P DTBNBXWJWCWCIK-UHFFFAOYSA-N |  | ||
| CD Query on CD | C [auth A], G [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | F [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.242
- R-Value Work: 0.197
- Space Group: P 31 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 84.375 | ¦Á = 90 |
| b = 84.375 | ¦Â = 90 |
| c = 160.459 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CrystalClear | data reduction |
| d*TREK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2005-06-14 Deposition Author(s): Gatti, D.L.
Revision History (Full details and data files)
- Version 1.0: 2005-06-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2021-10-27
Changes: Database references, Derived calculations - Version 1.4: 2023-08-23
Changes: Data collection, Refinement description
