Download MendeleyX-ray Structure of Gene Product from Arabidopsis Thaliana At5g06450
Center for Eukaryotic Structural GenomicsTo be published.
1VK0
X-ray Structure of Gene Product from Arabidopsis Thaliana At5g06450
- PDB DOI: https://doi.org/10.2210/pdb1VK0/pdb
- Classification: structural genomics, unknown function
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-04-12 Released: 2004-04-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.233
- R-Value Work: 0.180
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Re-refinement Note
A newer entry is available that reflects an alternative modeling of the original data: 2Q3S
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein | 206 | Arabidopsis thaliana | Mutation(s): 1 Gene Names: At5g06450 EC: 3.1.13.1 |  | |
UniProt | |||||
Find proteins for Q9FNG3 (Arabidopsis thaliana) Explore Q9FNG3 Go to UniProtKB: Q9FNG3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9FNG3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.233
- R-Value Work: 0.180
- R-Value Observed: 0.183
- Space Group: P 32 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 120.831 | ¦Á = 90 |
| b = 120.831 | ¦Â = 90 |
| c = 185.222 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| SOLVE | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2004-04-27 Deposition Author(s): Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)
Revision History (Full details and data files)
- Version 1.0: 2004-04-27
Type: Initial release - Version 1.1: 2008-02-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations - Version 1.5: 2024-10-30
Changes: Structure summary
