Download MendeleyCrystal structure of a monomeric phospholipase A2 from Russell's viper at 1.5A resolution
Kumar, S., Singh, N., Sharma, S., Perbandt, M., Betzel, C., Kaur, P., Singh, T.P.To be published.
2PYC
Crystal structure of a monomeric phospholipase A2 from Russell's viper at 1.5A resolution
- PDB DOI: https://doi.org/10.2210/pdb2PYC/pdb
- Classification: HYDROLASE
- Organism(s): Daboia russelii pulchella
- Mutation(s): No
- Deposited: 2007-05-16 Released: 2007-05-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 ?
- R-Value Free: 0.216 (Depositor), 0.220 (DCC)
- R-Value Work: 0.180 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.182 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phospholipase A2 VRV-PL-VIIIa | 121 | Daboia russelii pulchella | Mutation(s): 0 EC: 3.1.1.4 |  | |
UniProt | |||||
Find proteins for P59071 (Daboia russelii) Explore P59071 Go to UniProtKB: P59071 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P59071 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACT Query on ACT | B [auth A], C [auth A], D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CCN Query on CCN | G [auth A] | ACETONITRILE C2 H3 N WEVYAHXRMPXWCK-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 ?
- R-Value Free: 0.216 (Depositor), 0.220 (DCC)
- R-Value Work: 0.180 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.182 (Depositor)
Space Group: P 43
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 52.442 | ¦Á = 90 |
| b = 52.442 | ¦Â = 90 |
| c = 47.876 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2007-05-29 Deposition Author(s): Kumar, S., Singh, N., Sharma, S., Kaur, P., Betzel, C., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2007-05-29
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2024-10-09
Changes: Structure summary
