Download MendeleyCRYSTAL STRUCTURE OF ENDOGLUCANASE-RELATED PROTEIN FROM Vibrio parahaemolyticus
Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3H7L
CRYSTAL STRUCTURE OF ENDOGLUCANASE-RELATED PROTEIN FROM Vibrio parahaemolyticus
- PDB DOI: https://doi.org/10.2210/pdb3H7L/pdb
- Classification: HYDROLASE
- Organism(s): Vibrio parahaemolyticus
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2009-04-27 Released: 2009-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 ?
- R-Value Free: 0.232
- R-Value Work: 0.185
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ENDOGLUCANASE | 586 | Vibrio parahaemolyticus | Mutation(s): 3 Gene Names: VP2484 |  | |
UniProt | |||||
Find proteins for Q87LX4 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87LX4 Go to UniProtKB: Q87LX4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q87LX4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth A], E [auth B], F [auth B], G [auth C], H [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 ?
- R-Value Free: 0.232
- R-Value Work: 0.185
- R-Value Observed: 0.187
- Space Group: P 65 2 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 166.124 | ¦Á = 90 |
| b = 166.124 | ¦Â = 90 |
| c = 343.534 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-05-12 Deposition Author(s): Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2021-10-13
Changes: Database references - Version 1.5: 2024-02-21
Changes: Data collection
