Download MendeleyThe structure of dihydrolipoamide dehydrogenase from Colwellia psychrerythraea 34H.
Tan, K., Rakowski, E., Clancy, S., Joachimiak, A.To be published.
3IC9
The structure of dihydrolipoamide dehydrogenase from Colwellia psychrerythraea 34H.
- PDB DOI: https://doi.org/10.2210/pdb3IC9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Colwellia psychrerythraea 34H
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-07-17 Released: 2009-07-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 ?
- R-Value Free: 0.233
- R-Value Work: 0.186
- R-Value Observed: 0.189
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| dihydrolipoamide dehydrogenase | 492 | Colwellia psychrerythraea 34H | Mutation(s): 0 Gene Names: Colwellia psychrerythraea, CPS_0826 |  | |
UniProt | |||||
Find proteins for Q488E0 (Colwellia psychrerythraea (strain 34H / ATCC BAA-681)) Explore Q488E0 Go to UniProtKB: Q488E0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q488E0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | E [auth A], G [auth B], I [auth C], K [auth D] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | ||
| NA Query on NA | F [auth A], H [auth B], J [auth C], L [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 ?
- R-Value Free: 0.233
- R-Value Work: 0.186
- R-Value Observed: 0.189
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 73.497 | ¦Á = 90 |
| b = 246.353 | ¦Â = 90.2 |
| c = 73.664 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-28 Deposition Author(s): Tan, K., Rakowski, E., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-07-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
