Download MendeleyX-ray crystal structure of putative chorismate mutase from Bifidobacterium adolescentis.
Osipiuk, J., Bigelow, L., Bearden, J., Joachimiak, A.To be published.
3LUY
Putative chorismate mutase from Bifidobacterium adolescentis
- PDB DOI: https://doi.org/10.2210/pdb3LUY/pdb
- Classification: ISOMERASE
- Organism(s): Bifidobacterium adolescentis ATCC 15703
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-02-18 Released: 2010-03-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.225
- R-Value Work: 0.192
- R-Value Observed: 0.194
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable chorismate mutase | 329 | Bifidobacterium adolescentis ATCC 15703 | Mutation(s): 0 Gene Names: BAD_1067, pheA EC: 4.2.1.51 |  | |
UniProt | |||||
Find proteins for A1A2B5 (Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)) Explore A1A2B5 Go to UniProtKB: A1A2B5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1A2B5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PPY Query on PPY | B [auth A] | 3-PHENYLPYRUVIC ACID C9 H8 O3 BTNMPGBKDVTSJY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.225
- R-Value Work: 0.192
- R-Value Observed: 0.194
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 99.954 | ¦Á = 90 |
| b = 59.198 | ¦Â = 90 |
| c = 63.172 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2010-03-09 Deposition Author(s): Osipiuk, J., Bigelow, L., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-03-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
