Download MendeleyCrystal structure of Streptococcus pneumoniae MTA/SAH nucleosidase in complex with 8-aminoadenine
Siu, K.K.W., Lee, J.E., Horvatin-Mrakovcic, C., Howell, P.L.To be published.
3MMS
Crystal structure of Streptococcus pneumoniae MTA/SAH nucleosidase in complex with 8-aminoadenine
- PDB DOI: https://doi.org/10.2210/pdb3MMS/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus pneumoniae
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2010-04-20 Released: 2010-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 ?
- R-Value Free: 0.199
- R-Value Work: 0.182
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase | 230 | Streptococcus pneumoniae | Mutation(s): 4 Gene Names: mtnN, pfs, SPP_0997, spr0894 EC: 3.2.2.16 (PDB Primary Data), 3.2.2.9 (UniProt) |  | |
UniProt | |||||
Find proteins for A0A0H2UPP7 (Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)) Explore A0A0H2UPP7 Go to UniProtKB: A0A0H2UPP7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2UPP7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| Q88 Query on Q88 | B [auth A], C [auth A] | 9H-purine-6,8-diamine C5 H6 N6 PFUVOLUPRFCPMN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 ?
- R-Value Free: 0.199
- R-Value Work: 0.182
- Space Group: I 41 3 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 145.72 | ¦Á = 90 |
| b = 145.72 | ¦Â = 90 |
| c = 145.72 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| d*TREK | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| CrystalClear | data collection |
| d*TREK | data reduction |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2010-05-12 Deposition Author(s): Siu, K.K.W., Lee, J.E., Horvatin-Mrakovcic, C., Howell, P.L.
Revision History (Full details and data files)
- Version 1.0: 2010-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-10-06
Changes: Database references, Derived calculations - Version 1.3: 2024-02-21
Changes: Data collection
