Download MendeleyStructural and Functional Genomics of YibF, a Glutathione Transferase Homologue from Escherichia coli
Ladner, J.E., Stournan, N.V., Branch, M.C., Harp, J., Schaab, M., Brown, D.W., Armstrong, R.N.To be published.
3R2Q
Crystal Structure Analysis of yibF from E. Coli
- PDB DOI: https://doi.org/10.2210/pdb3R2Q/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-03-14 Released: 2012-03-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 ?
- R-Value Free: 0.153
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized GST-like protein yibF | 202 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: b3592, JW3565, yibF |  | |
UniProt | |||||
Find proteins for P0ACA1 (Escherichia coli (strain K12)) Explore P0ACA1 Go to UniProtKB: P0ACA1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0ACA1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GSH Query on GSH | B [auth A] | GLUTATHIONE C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N |  | ||
| PO4 Query on PO4 | C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| EDO Query on EDO | D [auth A], E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSX Query on CSX | A | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 ?
- R-Value Free: 0.153
- Space Group: P 43 3 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 111.34 | ¦Á = 90 |
| b = 111.34 | ¦Â = 90 |
| c = 111.34 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHASER | phasing |
| SHELX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| ARP/wARP | model building |
| SHELXL-97 | refinement |
Entry History
Deposition Data
- Released Date: 2012-03-14 Deposition Author(s): Ladner, J.E., Harp, J., Schaab, M., Stournan, N.V., Armstrong, R.N.
Revision History (Full details and data files)
- Version 1.0: 2012-03-14
Type: Initial release
