Download MendeleyAlternative analogs as viable substrates of UDP-hexose 4-epimerases
Bhatt, V.S., Guan, W., Wang, P.G.To be published.
3RUF
Alternative analogs as viable substrates of UDP-hexose 4-epimerases
- PDB DOI: https://doi.org/10.2210/pdb3RUF/pdb
- Classification: ISOMERASE
- Organism(s): Plesiomonas shigelloides
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-05-05 Released: 2011-05-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.248 (Depositor), 0.250 (DCC)
- R-Value Work: 0.204 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.206 (Depositor)
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| WbgU | A, B, C [auth S], D [auth b] | 351 | Plesiomonas shigelloides | Mutation(s): 0 Gene Names: wbgU EC: 5.1.3.7 |  |
UniProt | |||||
Find proteins for Q7BJX9 (Plesiomonas shigelloides) Explore Q7BJX9 Go to UniProtKB: Q7BJX9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7BJX9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | E [auth A], H [auth B], J [auth S], L [auth b] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| UDP Query on UDP | F [auth A], I [auth B], K [auth S], M [auth b] | URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N |  | ||
| SO4 Query on SO4 | G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.248 (Depositor), 0.250 (DCC)
- R-Value Work: 0.204 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.206 (Depositor)
Space Group: P 32
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 77.978 | α = 90 |
| b = 77.978 | β = 90 |
| c = 223.873 | γ = 120 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2011-05-25 Deposition Author(s): Bhatt, V.S., Guan, W., Wang, P.G.
Revision History (Full details and data files)
- Version 1.0: 2011-05-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-02-28
Changes: Data collection, Database references, Derived calculations
