Download MendeleyTetR(D) in Complex with Tigecycline and Magnesium
Volkers, G., Hinrichs, W.To be published.
4ABZ
TetR(D) in Complex with Tigecycline and Magnesium, co-crystallized
- PDB DOI: https://doi.org/10.2210/pdb4ABZ/pdb
- Classification: TRANSCRIPTION
- Organism(s): Escherichia coli
- Expression System: Escherichia coli K-12
- Mutation(s): Yes
- Deposited: 2011-12-12 Released: 2012-12-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 ?
- R-Value Free: 0.258
- R-Value Work: 0.213
Starting Model: experimental
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This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tetracycline repressor protein class D | A [auth AAA] | 207 | Escherichia coli | Mutation(s): 1 Gene Names: tetR |  |
UniProt | |||||
Find proteins for P0ACT4 (Escherichia coli) Explore P0ACT4 Go to UniProtKB: P0ACT4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0ACT4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| T1C (Subject of Investigation/LOI) Query on T1C | B [auth AAA] | TIGECYCLINE C29 H41 N5 O8 FPZLLRFZJZRHSY-HJYUBDRYSA-P |  | ||
| CL Query on CL | D [auth AAA], E [auth AAA], F [auth AAA] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG (Subject of Investigation/LOI) Query on MG | C [auth AAA] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 ?
- R-Value Free: 0.258
- R-Value Work: 0.213
- Space Group: I 41 2 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 68.49 | ¦Á = 90 |
| b = 68.49 | ¦Â = 90 |
| c = 179.25 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2012-12-26 Deposition Author(s): Volkers, G., Hinrichs, W.
Revision History (Full details and data files)
- Version 1.0: 2012-12-26
Type: Initial release - Version 2.0: 2020-04-29
Type: Coordinate replacement
Reason: Model completeness
Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Experimental preparation, Non-polymer description, Other, Polymer sequence, Refinement description, Source and taxonomy, Structure summary, Version format compliance - Version 2.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Refinement description
