Download MendeleyBacterial Photosynthetic Reaction Center from Rhodobacter sphaeroides
Mattis, A.J., Wraight, C.A.To be published.
4HBH
Bacterial Photosynthetic Reaction Center from Rhodobacter sphaeroides with ILE M265 replaced with ASN
- PDB DOI: https://doi.org/10.2210/pdb4HBH/pdb
- Classification: PHOTOSYNTHESIS
- Organism(s): Cereibacter sphaeroides
- Expression System: Cereibacter sphaeroides
- Mutation(s): Yes
- Membrane Protein: Yes PDBTMMemProtMD
- Deposited: 2012-09-28 Released: 2013-01-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.93 ?
- R-Value Free: 0.226
- R-Value Work: 0.185
- R-Value Observed: 0.187
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Reaction center protein L chain | A [auth L] | 281 | Cereibacter sphaeroides | Mutation(s): 0 Gene Names: pufL Membrane Entity: Yes |  |
UniProt | |||||
Find proteins for P0C0Y8 (Cereibacter sphaeroides) Explore P0C0Y8 Go to UniProtKB: P0C0Y8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C0Y8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Reaction center protein M chain | B [auth M] | 313 | Cereibacter sphaeroides | Mutation(s): 1 Gene Names: pufM Membrane Entity: Yes |  |
UniProt | |||||
Find proteins for P0C0Y9 (Cereibacter sphaeroides) Explore P0C0Y9 Go to UniProtKB: P0C0Y9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C0Y9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Reaction center protein H chain | C [auth H] | 260 | Cereibacter sphaeroides | Mutation(s): 0 Membrane Entity: Yes |  |
UniProt | |||||
Find proteins for P0C0Y7 (Cereibacter sphaeroides) Explore P0C0Y7 Go to UniProtKB: P0C0Y7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C0Y7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BCL Query on BCL | D [auth L], E [auth L], I [auth M], K [auth M] | BACTERIOCHLOROPHYLL A C55 H74 Mg N4 O6 DSJXIQQMORJERS-AGGZHOMASA-M |  | ||
| BPH Query on BPH | F [auth L], L [auth M] | BACTERIOPHEOPHYTIN A C55 H76 N4 O6 KWOZSBGNAHVCKG-SZQBJALDSA-N |  | ||
| U10 Query on U10 | G [auth L], H [auth L], M | UBIQUINONE-10 C59 H90 O4 ACTIUHUUMQJHFO-UPTCCGCDSA-N |  | ||
| SPO Query on SPO | N [auth M] | SPHEROIDENE C41 H60 O FJOCMTHZSURUFA-KXCOHNEYSA-N |  | ||
| FE Query on FE | J [auth M] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.93 ?
- R-Value Free: 0.226
- R-Value Work: 0.185
- R-Value Observed: 0.187
- Space Group: P 31 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 139.72 | α = 90 |
| b = 139.72 | β = 90 |
| c = 183.98 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| REFMAC | phasing |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2013-01-23 Deposition Author(s): Mattis, A.J., Wraight, C.A.
Revision History (Full details and data files)
- Version 1.0: 2013-01-23
Type: Initial release - Version 1.1: 2019-07-17
Changes: Data collection, Refinement description - Version 1.2: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
