Download MendeleyStructure of CYP107L2
Pham, T.-V., Han, S.-H., Kim, J.-H., Kim, D.-H., Kang, L.-W.To be published.
5CJE
Structure of CYP107L2
- PDB DOI: https://doi.org/10.2210/pdb5CJE/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Streptomyces avermitilis MA-4680 = NBRC 14893
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-07-14 Released: 2016-07-20
- Funding Organization(s): National Research Foundation of Korea, Cooperative Research Program for Agriculture Science & Technology Development
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.255
- R-Value Work: 0.170
- R-Value Observed: 0.174
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome P450 hydroxylase | 393 | Streptomyces avermitilis MA-4680 = NBRC 14893 | Mutation(s): 0 Gene Names: cyp8, SAV_1987 |  | |
UniProt | |||||
Find proteins for Q82LM3 (Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)) Explore Q82LM3 Go to UniProtKB: Q82LM3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82LM3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.255
- R-Value Work: 0.170
- R-Value Observed: 0.174
- Space Group: C 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 110.184 | ¦Á = 90 |
| b = 50.585 | ¦Â = 98.91 |
| c = 74.638 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHASER | phasing |
| Coot | model building |
| DENZO | data processing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-07-20 Deposition Author(s): Pham, T.-V., Han, S.-H., Kim, J.-H., Kim, D.-H., Kang, L.-W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation of Korea | Korea, Republic Of | 2011-0016509 |
| Cooperative Research Program for Agriculture Science & Technology Development | Korea, Republic Of | PJ01127901 |
Revision History (Full details and data files)
- Version 1.0: 2016-07-20
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
